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Report for CCDS40402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40402.1 Public Mus musculus 8 Rnf150 23 108 98 CCDS HistoryNCBI Gene:330812Re-query CCDS DB by CCDS ID:40402.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078525.6 ENSMUSP00000077610.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078525.6Link to Ensembl Protein Viewer:ENSMUSP00000077610.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078525Re-query CCDS DB by Protein ID:ENSMUSP00000077610
Original member Current member NCBI NM_177378.4 NP_796352.2 Accepted alive Link to Nucleotide Sequence:NM_177378.4Link to Protein Sequence:NP_796352.2Re-query CCDS DB by Nucleotide ID:NM_177378Re-query CCDS DB by Protein ID:NP_796352Link to BLAST:NP_796352.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796352.2 437 Q5DTZ6-1 437 100% 0 0

Chromosomal Locations for CCDS 40402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 82864010 82864490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 82990347 82990597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83003575 83003646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83006330 83006412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83036025 83036121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83042572 83042782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83083436 83083554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGACAATGTCTCTCATCCAAGCGTGCCGCAGTCTGGCTCTCTCAACATGGCTGCTTTCCTTTTGTTTCG
TGCATCTGCTCTGCCTGGACTTCACCGTGGCGGAGAAGGAGGAATGGTACACCGCCTTCGTGAACATCAC
CTATTTGGAGCCCGAGCCCGGGGCCGCGGTGGCGGGCAGCGGTGGCGGCGCGGAGCTGCACACGGAGAAG
AGCGAGTGCGGGCGATACGGGGAGCACTCGCCCAAGCAGGACGCGCGCGGCGAGGTGGTCATGGCCAGCT
CGGCCCAAGACCGCCTGGCTTGCGACCCCAACACCAAGTTCGCCGCGCCGGCCCACGGCAAGCACTGGAT
AGCCCTCATCCCCAAGGGCAACTGCACGTACAGGGATAAGATCCGGAACGCGTTCCTGCAGAACGCCTCC
GCTGTGGTCATCTTTAACGTGGGCTCCAACACAAACGAGACCATCACCATGCCCCACGCAGGTGTGGAAG
ACATCGTGGCTATAATGATTCCTGAGCCCAAAGGGAAGGAGATAGTGAGCCTGCTGGAAAGGAACATCAC
CGTGACGATGTACATCACCATCGGCACCCGGAACTTGCAAAAATATGTGAGCCGCACGTCGGTTGTGTTT
GTCTCCATCTCCTTCATTGTCCTGATGATCATTTCTCTGGCATGGCTGGTCTTTTATTATATCCAGAGGT
TTCGGTATGCAAATGCCAGGGACAGGAACCAGCGCCGACTGGGAGATGCAGCAAAGAAAGCCATCAGCAA
GCTCCAGGTCAGGACCATCAGGAAGGGTGACAAGGAAACAGAGTCCGATTTTGATAACTGTGCAGTCTGC
ATAGAGGGGTACAAGCCCAACGATGTGGTCAGGATCCTGCCCTGCCGGCATCTTTTCCACAAGTCCTGTG
TTGACCCCTGGCTTCTAGACCATCGCACCTGCCCCATGTGCAAGATGAACATTCTTAAGGCCCTAGGGAT
CCCGCCCAATGCTGACTGCATGGATGACTTGCCCATTGATTTTGAGGGCTCTCTAGGAGGCCCACCAACC
AATCAAATCACAGGAGCCAGCGACACAACTGTCAATGAGAGCTCTGTCACTCTGGACCCTGCTGTGCGGA
CAGTGGGAGCCCTGCAGGTGGTCCAGGACCCAGACCCTGCTCCTCAGGAGGGAGAAGCCATCTTTACAAC
TAACAGTGGTCAAGAGCCAGCACTGAGCAGTGACTCTGACATCTCATTAATTATGGCACTGGAAGTGGGC
CTGTCTGATGTAGAACTTTCCACTGACCAAGACTGCGAGGAGGTGAAATCTTGA

Translation (437 aa):
MTMSLIQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYLEPEPGAAVAGSGGGAELHTEK
SECGRYGEHSPKQDARGEVVMASSAQDRLACDPNTKFAAPAHGKHWIALIPKGNCTYRDKIRNAFLQNAS
AVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITIGTRNLQKYVSRTSVVF
VSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQVRTIRKGDKETESDFDNCAVC
IEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPIDFEGSLGGPPT
NQITGASDTTVNESSVTLDPAVRTVGALQVVQDPDPAPQEGEAIFTTNSGQEPALSSDSDISLIMALEVG
LSDVELSTDQDCEEVKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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