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Report for CCDS19762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19762.1 Public Mus musculus 5 Trim56 23 108 98 CCDS HistoryNCBI Gene:384309Re-query CCDS DB by CCDS ID:19762.1Re-query CCDS DB by GeneID:384309See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054384.5 ENSMUSP00000058109.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054384.5Link to Ensembl Protein Viewer:ENSMUSP00000058109.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054384Re-query CCDS DB by Protein ID:ENSMUSP00000058109
Original member Current member NCBI NM_201373.4 NP_958761.1 Accepted alive Link to Nucleotide Sequence:NM_201373.4Link to Protein Sequence:NP_958761.1Re-query CCDS DB by Nucleotide ID:NM_201373Re-query CCDS DB by Protein ID:NP_958761Link to BLAST:NP_958761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958761.1 734 Q80VI1 734 99.8638% 0 1

Chromosomal Locations for CCDS 19762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137112456 137114660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGAACTCCAAAGACTCCTCCCCAACTCTGCTGGAAGCTCTGAGCAGCGATTTCCTAGCCTGTAAAATCT
GCCTGGAGCAGTTACACACACCCAAGACTCTGCCATGCCTACATACCTATTGCCAGGACTGTCTGGCACA
ACTGGACATCGGTGGTCAGGTCCGCTGCCCCGAGTGTCGGGAGATTGTGCCTGTACCCGCCGAAGGGGTG
GCCGCCTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCGGAGACG
TCCATTCAGGGAAGCCAACTTGCGCTCTGTGCCCTCTGGTGGGAGGCAAGAGCTCTGGGGGACCCGCCAC
AGCCAGGTGCCTGGACTGTGCCGACGACTTATGCCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCAG
ACCCATAAGCACCGTGTCGTTGACTTGGTGGGTTACAGAGCCGGGTGGTATGATGAAGAGGCTCGAGAGC
GCCAGGCGTCCCAGTGTCCCCAGCACCCAGGGGAAGCCCTCTGCTTCCTCTGTCAACCTTGTTCTCAGTT
GCTCTGCAAGGATTGCCGCCTGGGTCCCCATATCGATCACCCCTGCTTGCCCCTAGCGGAAGCAGTGCGT
TCCAGGAAGCCAGGCCTTGAGGAGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTC
GGGTGGCAGAAAAGGAAGCCCTGGCCTTGCTTCGGGAGCAGGCAGCCAGTGTGGGGACTCAGGTGGAGGA
GGCAGCTGAACGAATCCTCAAGTCCCTGCTGGCCCAGAAGCAGGAAGTGCTGGGACAACTCCGGGCCCTT
GTGGAGGCTGCTGAGGAGGCTACCAGGGAGAGGTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGG
CGGCGGCTGCCTTTGCCCGTCGAGTGCTCAGCTTGGGTCTAGAGGCCGAGATCCTTTCGCTGGAGGGAGC
AATCACACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGACGTCTGGGCCCACCCGCTGTGTGCTGCCC
CAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCCTA
AACAATCCCCGAAGGACAGCGGGAAGGGTGGGGCTGGTACCCAAGGAGGGGATGAAGCTCAAGGCCAAGG
GGACGATAGAACCAAGATAGGGAAGCAGGGTGGAGCCCAGCCCCTGACTCCCAAAGAAGGCAAAGACCAG
AACCCCCAAGAAGATGATGGGGTCTTCATCGAAAGGGGTAACAGGCCTAACAAGAAGAAGAAGTGCAAAG
GCAGAGGCAAGTCTGTTTCTCGGGAGCCCAGCCCCATCCTGAGGCCAAACCTAGAAGGTTCCGGCCTCCT
CCCTCGGCCTGTGTTTTCCTGGAGTTTCCCCACGAGGATGCCCGGGGACAAGCGCTCCCCTCGCATCACT
GGACTCTGTCCCTACGGCCCCCAGGAAATCTTGGTGGCAGATGAGCAGAACAGGGTCTTGAAACGCTTCT
CCCTCAATGGGGACTACAAAGGCACAGTGCAGGTCCCCGAGGGCTGTTCCCCGTGCAGCGTGGCTGCCCT
GCAGAATGCAGTGGCTTTCTCTGCCAATGCAAAACTCTATCTTGTCAGTCCTGACGGAGAAATTCAGTGG
CGCAGGTCCCTGAGCCTCACCCAGTCCAGCCACGCCGTGGCCGCAATGCCATGTGGAGACCGAGTAGCTG
TCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTACCCGCTTTATCCCTGGAGG
CAAGGCTAGCCGGGGCCAGCGGGCACTGGTGTTCCTAACCACCAGCCCCCAGGGCAATTTTGTAGGGTCA
GATTGGCAGCAGAATAGCGTGGTTTTCTGTGATGGGTTAGGTCAGGTGATCTGGGAATACAAGGGCCCTG
GGTTACATGGCTGCCAGCCAGGTTCTGTGTCTGTGGATAAGAAGGGCTACATATTTCTGACCCTTCGAGA
GGTAAACAAGGTGGTGATACTGGATCCCAAGGGGTCACTTCTTGGTGACTTCCTAACAGCATACCATGGC
CTGGAAAAGCCCCGGGTAACCACCATGGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCA
TCCATGTCTTTAGGGTCAGGTTTCCTGACAGCTAA

Translation (734 aa):
MNSKDSSPTLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDCLAQLDIGGQVRCPECREIVPVPAEGV
AAFKTNFFVNGLLDLVKARAPGDVHSGKPTCALCPLVGGKSSGGPATARCLDCADDLCQACADGHRCSRQ
THKHRVVDLVGYRAGWYDEEARERQASQCPQHPGEALCFLCQPCSQLLCKDCRLGPHIDHPCLPLAEAVR
SRKPGLEELLAGVDSNLVELEATRVAEKEALALLREQAASVGTQVEEAAERILKSLLAQKQEVLGQLRAL
VEAAEEATRERLTKIERQEQVAKAAAAFARRVLSLGLEAEILSLEGAITQRLRQLQDAPWTSGPTRCVLP
QLELHPGLEDKNCHLLRLIFEEPKQSPKDSGKGGAGTQGGDEAQGQGDDRTKIGKQGGAQPLTPKEGKDQ
NPQEDDGVFIERGNRPNKKKKCKGRGKSVSREPSPILRPNLEGSGLLPRPVFSWSFPTRMPGDKRSPRIT
GLCPYGPQEILVADEQNRVLKRFSLNGDYKGTVQVPEGCSPCSVAALQNAVAFSANAKLYLVSPDGEIQW
RRSLSLTQSSHAVAAMPCGDRVAVSVAGHVEVYKKDGSLATRFIPGGKASRGQRALVFLTTSPQGNFVGS
DWQQNSVVFCDGLGQVIWEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHG
LEKPRVTTMVDGKYLVVSLSNGTIHVFRVRFPDS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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