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Report for CCDS17355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17355.1 Public Mus musculus 3 Sertm1 23 108 98 CCDS HistoryNCBI Gene:329641Re-query CCDS DB by CCDS ID:17355.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070342.3 ENSMUSP00000064870.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070342.3Link to Ensembl Protein Viewer:ENSMUSP00000064870.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070342Re-query CCDS DB by Protein ID:ENSMUSP00000064870
Original member Current member EBI ENSMUST00000162201.1 ENSMUSP00000124102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162201.1Link to Ensembl Protein Viewer:ENSMUSP00000124102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162201Re-query CCDS DB by Protein ID:ENSMUSP00000124102
Original member Current member NCBI NM_177854.4 NP_808522.1 Accepted alive Link to Nucleotide Sequence:NM_177854.4Link to Protein Sequence:NP_808522.1Re-query CCDS DB by Nucleotide ID:NM_177854Re-query CCDS DB by Protein ID:NP_808522Link to BLAST:NP_808522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808522.1 107 Q8CD78 107 100% 0 0

Chromosomal Locations for CCDS 17355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54899279 54899602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGTCGGAGGCTGACTCATCATCTGGATTTGCCGGAAGTGTGGAGAATGGAACTTTCCTGGAGCTGTTTC
CCACATCGCTGTCCACGTCGGTGGACTCGTCCTCGGGCCACCTGTCCAACGTCTACATCTATGTCTCCAT
ATTCCTCAGCCTCCTGGCTTTCCTGCTTCTGCTGCTGATCATTGCTCTTCAGAGGCTGAAGAACATCATC
TCTTCCAGCTCCTCGTACCCGGAGTATCCTAGTGACGCTGGGAGTTCTTTCACCAACCTAGAGGTGTGTA
GTATCTCCTCTCAGAGGTCGACGTTTTCAAACCTCTCATCCTGA

Translation (107 aa):
MSEADSSSGFAGSVENGTFLELFPTSLSTSVDSSSGHLSNVYIYVSIFLSLLAFLLLLLIIALQRLKNII
SSSSSYPEYPSDAGSSFTNLEVCSISSQRSTFSNLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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