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Report for CCDS16087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16087.1 Public Mus musculus 2 Nostrin 23 108 98 CCDS HistoryNCBI Gene:329416Re-query CCDS DB by CCDS ID:16087.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041865.7 ENSMUSP00000036923.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041865.7Link to Ensembl Protein Viewer:ENSMUSP00000036923.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041865Re-query CCDS DB by Protein ID:ENSMUSP00000036923
Original member Current member NCBI NM_181547.3 NP_853525.3 Accepted alive Link to Nucleotide Sequence:NM_181547.3Link to Protein Sequence:NP_853525.3Re-query CCDS DB by Nucleotide ID:NM_181547Re-query CCDS DB by Protein ID:NP_853525Link to BLAST:NP_853525.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853525.3 506 Q6WKZ7 506 100% 0 0

Chromosomal Locations for CCDS 16087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69135890 69135916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69144770 69144855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69152335 69152418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69156113 69156175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69156373 69156454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69158769 69158831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69161070 69161168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69165882 69166007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69175507 69175605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69175703 69175828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69179385 69179493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69180831 69180919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69182827 69182952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69183881 69183995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69185459 69185548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69188997 69189133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGAGGGACCCACTGACGGACTGTTCGTACAATAAAGTATACAAGAGCCTGAAAGAGTTTGCCCAACATG
GAGACAATTTCTGCAAGCAGATCACATCTGTTCTTCAGCAAAGGGCCAACCTGGAGATTAGCTACGCCAA
AGGGCTTCAGAAACTGGCCGTCAGGCTCAGCAAAGCACTACAGAGCACAAAGAAAAACTGTCTCAGCACT
GCTTGGGCCTGGGCCTCAGAGAGCATGAAGTCTGCAGCAGACCTCCATCAAAAACTTGGCAAAGCAATTG
AGTTGGAAGCGATAAAGCCAACACACCAGGTCCTGAGTATGCAAGAGAAGAAGAGAAAGTCGCTTGATAA
TGAAGTGGAAAAGACAGCAAATCTTGTTATTAATAACTGGAATCAGCAAATCAAGGCTAAGAAAAAATTA
ATGATGAGTACCAAGAAGCATGAAGCACTTTTCCACCTTGTAGAAAGCTCCAAGCAATCCCTGACCCAGA
AGGAGAAGCAGAAGCTCCTCAACAAACTGAAAAAATCAACTGAAAAACTGGAAAAAGAAGATGAAAGTTA
CTACCAAAAAAACATGGCAGGCTATTCTACCAGGCTGAAGTGGGAAAGCACCCTGGAAAACTGCTACAAG
AGCATGCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATA
TTTCTCTTTTTGGACAAACGCTGACCACATGCCACACACAGATCCACTGTGCCATCAGCAAGGTTGATGT
TGAAAAAGATATCCAGGCTCTAATGGAAGAAACTGCAATCCTGTCTATAGAAAACAAATCGGAGCTTCTC
CTGGCTGACTATTTTGAAGAAGATCCAAAGAACCCAATGGACAAAGAGCGACGGAAGTCTTTATTAAAAC
CCAAATTGGGGAGACTGCAAAGAGACATTGAAAAGGCCTCAAGAGACAAAGAAGGCTTGGAGCGGAAGCT
TAAAGCACTCGCCAGCAGCTCCTCCTTTTCTGATGCCAAGAGCCAGAAAGACATGGAGACCCTAATGGAT
GAGAACAGTTTGAAACTAGACCTTTTGCAAGCGAACTCCTACAAACTGTCGTCAGTGTTGGCAGACCTGG
AGCAACGGCCAAAGCCCTGCCATCCCTGTAGCACCTGCATTTTCAAGTGGAAAGAAAAGGAGCACTCTCA
TACTTATGTGAAAATATCCCGGCCTCTTTTGACGAAGAGATTAGAGAAAGCTGAGAGCAAAGCACCTGCG
GGTGGGCAGAACAATCCAAGCTCTTCACCTTCAGGCTCTACTGTGTCCCAAGCCAGCAAGCATCTTTGCA
AAGCCTTATATACGTTCCAAGCCAGGCAAGATGATGAGTTGAATTTGGAAAAAGGAGACATCGTGACCGT
CCATGAGAAGAAAGAAGAAGGATGGTGGTTCGGCTCTTTAAAAGGGAAGAGAGGCCATTTTCCTGCTGCC
TATGTGGAGGAGCTACCTCCAAAGGCTGGAAACACAGCTACACAGGCATAA

Translation (506 aa):
MRDPLTDCSYNKVYKSLKEFAQHGDNFCKQITSVLQQRANLEISYAKGLQKLAVRLSKALQSTKKNCLST
AWAWASESMKSAADLHQKLGKAIELEAIKPTHQVLSMQEKKRKSLDNEVEKTANLVINNWNQQIKAKKKL
MMSTKKHEALFHLVESSKQSLTQKEKQKLLNKLKKSTEKLEKEDESYYQKNMAGYSTRLKWESTLENCYK
SMLELEKERIQLLCNNLNQYSQHISLFGQTLTTCHTQIHCAISKVDVEKDIQALMEETAILSIENKSELL
LADYFEEDPKNPMDKERRKSLLKPKLGRLQRDIEKASRDKEGLERKLKALASSSSFSDAKSQKDMETLMD
ENSLKLDLLQANSYKLSSVLADLEQRPKPCHPCSTCIFKWKEKEHSHTYVKISRPLLTKRLEKAESKAPA
GGQNNPSSSPSGSTVSQASKHLCKALYTFQARQDDELNLEKGDIVTVHEKKEEGWWFGSLKGKRGHFPAA
YVEELPPKAGNTATQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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