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Report for CCDS23152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23152.1 Public Mus musculus 9 Nxpe4 23 108 98 CCDS HistoryNCBI Gene:244853Re-query CCDS DB by CCDS ID:23152.1Re-query CCDS DB by GeneID:244853See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093853.4 ENSMUSP00000091375.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093853.4Link to Ensembl Protein Viewer:ENSMUSP00000091375.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093853Re-query CCDS DB by Protein ID:ENSMUSP00000091375
Original member Current member EBI ENSMUST00000215780.1 ENSMUSP00000149741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215780.1Link to Ensembl Protein Viewer:ENSMUSP00000149741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215780Re-query CCDS DB by Protein ID:ENSMUSP00000149741
Original member Current member NCBI NM_172921.3 NP_766509.2 Accepted alive Link to Nucleotide Sequence:NM_172921.3Link to Protein Sequence:NP_766509.2Re-query CCDS DB by Nucleotide ID:NM_172921Re-query CCDS DB by Protein ID:NP_766509Link to BLAST:NP_766509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766509.2 543 Q52KP5-1 543 100% 0 0

Chromosomal Locations for CCDS 23152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48390260 48390352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48392708 48393441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48394139 48394200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48396487 48396693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48398535 48399070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGAAAACGCTGGCCAGTCGTAAGTCACTGTGGATGCTGCTTTTTATAGTCATCTTCTGGGTCTCTTTTA
CAGTTTTCAGAAACCCTGTGAAGCTACGGACCATGTTCAAGTTGCCTGTGTCCTTCAATCGCTGGAACTT
GGTCATGGGACCCTCATGCCCTGCAGTGCCTCTGAACCTACCAGTTTCACCAAAAGAGACAGAACTGAGA
ATCAGGGAGGTCCTGGAGAAACTAGACAAACAGATCCCTCCCAGACCCTTCACCCACCTCAACTACACCA
CAAGCGCCACACACAGTACAGCCACCATCCTCAACCCTCGGGATACACACTGTGTGGGGGACCAGCTGGA
CATCCTGGTAGAGGCTAGAGACCACCTAGGAAACAGGAAGGGGTATGGTGGGGACTTCATGAGGGCCAGG
ATGTTCTCCCCAGCCCTGAAGGCAGGAGCTTCTGGAAAGGTGACAGACTTCAACAATGGCACTTACCTCG
TCAGCTTCACTCTGTTCTGGGAGGGCACGGTCTCCCTGTCTATCCTGCTCATGCACCCCAGTGAAGGGGT
GTCAGCTCTCTGGAGATCAAGGAAACAGGGCTACGACAGAATCATCTTCTCAGGCCAGTTTGTCAGTGGT
GCTTCTCAGGTCCACACTGAATGTGCCCTGGTTCTAAATTCAAGTGTTGAGCTGTGCCAGTATCTGGATG
CCCAGGACCAAGAAGCTTTCTACTGTGTGAAGCCTCCAAATGTGCCCTGTGCAGCTCTCACCTACATGCA
GTCAAAGAACAAGGATGTTTCCTATCTTAGCCAACAAGAAAGGAGCCTCTTTGAAAGGTCAAATATAGCT
GTGGAGATTATGGAAAAATCCAATGCGATTAGTGTCTCCAAATGCAACACAGACACAGCTCCAGTGAAGG
AGAAATGCAAGCTCGGGATGGTATCTGCAATCCCTAGTGGGCACGTCTGGAAAAACGCATGGACTCCTGC
CTCCTGCAGTCTGGCTCCAATCAAAATGAAAGACTGCCTGAGGGGAAAATTTATCTATCTAATGGGTGAT
TCCACAATCCGCCAGTGGATGGAATACTTCAAAAGCAAAGTCAACACACTGAGGTCCGTGGACCTGCATG
AGAGTGGGAAACTGCAACACCAACTTGCCGTGGACTTGGATGAGAAAATCAGCATCCAGTGGCAAAAACA
TGGTTACCCTCTTATCGGGTCATTGGTCTACTCTGTCAAAGAAATAGAGAACATTGCACGGATAATTGAC
AGAACTGGAGGAGAGAAAAACACAGTCATCGTCATTTCTCTGGGCCAGCATTTCAGACCCTTTCCCATTG
ATCTTTTTATCCGAAGGGCCCTCAATGTTCACAAAGCTCTTCAGCGTCTTCTCCTGAGAAGCCCGGACAC
TGTGGTGGTCCTCAAAACAGAAAACACCAGGGAGTTAAACAGCGACGTGGAGAGGTTTAGTGACTTCCAT
GGTTACACGCAGTATCTTGCCTTAAAGGATATTTTCCAGGATCTCAATGTGGGTGTCATTGATGCCTGGG
ACATGACAGTTGCATATGGCATAAACAATGTCCACCCACCAGAGGATGTAGTTAGAAGTCAAATTAATAT
ATTCTTAAACTACATTTGCTAG

Translation (543 aa):
MKTLASRKSLWMLLFIVIFWVSFTVFRNPVKLRTMFKLPVSFNRWNLVMGPSCPAVPLNLPVSPKETELR
IREVLEKLDKQIPPRPFTHLNYTTSATHSTATILNPRDTHCVGDQLDILVEARDHLGNRKGYGGDFMRAR
MFSPALKAGASGKVTDFNNGTYLVSFTLFWEGTVSLSILLMHPSEGVSALWRSRKQGYDRIIFSGQFVSG
ASQVHTECALVLNSSVELCQYLDAQDQEAFYCVKPPNVPCAALTYMQSKNKDVSYLSQQERSLFERSNIA
VEIMEKSNAISVSKCNTDTAPVKEKCKLGMVSAIPSGHVWKNAWTPASCSLAPIKMKDCLRGKFIYLMGD
STIRQWMEYFKSKVNTLRSVDLHESGKLQHQLAVDLDEKISIQWQKHGYPLIGSLVYSVKEIENIARIID
RTGGEKNTVIVISLGQHFRPFPIDLFIRRALNVHKALQRLLLRSPDTVVVLKTENTRELNSDVERFSDFH
GYTQYLALKDIFQDLNVGVIDAWDMTVAYGINNVHPPEDVVRSQINIFLNYIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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