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Report for CCDS57029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57029.1 Public Mus musculus 16 Tmem39a 23 108 98 CCDS HistoryNCBI Gene:67846Re-query CCDS DB by CCDS ID:57029.1Re-query CCDS DB by GeneID:67846See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171687.7 ENSMUSP00000126218.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171687.7Link to Ensembl Protein Viewer:ENSMUSP00000126218.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171687Re-query CCDS DB by Protein ID:ENSMUSP00000126218
Original member Current member NCBI NM_001205287.1 NP_001192216.1 Accepted alive Link to Nucleotide Sequence:NM_001205287.1Link to Protein Sequence:NP_001192216.1Re-query CCDS DB by Nucleotide ID:NM_001205287Re-query CCDS DB by Protein ID:NP_001192216Link to BLAST:NP_001192216.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192216.1 418 Q9CYC3-2 418 100% 0 0

Chromosomal Locations for CCDS 57029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38564189 38564301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38573054 38573276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38575743 38575826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38581970 38582124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38585380 38585518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38586221 38586408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38588183 38588303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38590912 38591145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCCCAGTAGAAGGCGGGGTCCCAGTCGGCAGCAGCTAAGCCGGTCAGCTTTACCTTCCATACAGACGT
TGGTCGGCGGCGGCTGTGGCAATGGGACGGGCTTGAGGAACAGGAATGGTAATGCTATTGGCCTTCCAGT
CCCACCCACCACAGCCTTAATTACCCCAGGTCCTGTTCGTCATTGCCAAATCCCTGACTTACCAGTAGAT
GGGAGCCTGTTCTTTGAATTTCTTTTCTTCATCTACCTGCTGATTGTTCTGTTCATTCAGTATATCAACA
TCTATAAGACGGTGTGGTGGTATCCGTACAATCATCCTGCTTCTTGTACTTCACTGAATTTTCACCTCAT
TGATTATTACCTGGCAGCATTCATCACAGTGATGCTTGCGAGGAGGCTTGTATGGGCCCTCATTTCCGAG
GCTACTAAAGCAGGTGCTGCGTCTACGGTTCACTACACAGCTCTGATCCTGGCCCGCTTGGTGCTCCTTA
CTCTGTGTGGATGGGTGCTCTGCTGGACCCTGGTCAATCTTTTCCGAAGCCATTCAGTCCTCAATCTCCT
GTTCCTTGGCTATCCCTGCCCCCTATCTCCTGATCTCATTCGCAATGAAGTAGAATGTCTGAAAGCAGAT
TTCAACCACAGAATCAAGGAAGTTCTCTTCAACTCCCTCTTCAGTGCCTACTACGTTGCATTTCTCCCGC
TGTGTTTTGTGAAGAGTACCCAGTATTACGACATGCGCTGGTCGTGTGAGCACCTCATTATGGTGTGGAT
CAATGCTTTTGTCATGCTCACCACGCAACTGCTGCCATCCAAATACTGTGACTTGCTACACAAATCAGCT
GCTCACCTGGGCAAGTGGCAGAAGTTGGAGCATGGGTTCTACAGCAATGCTCCACAGCACATTTGGTCAG
AAAACACAATATGGCCTCAAGGGGTGTTGGTGCGGCACAGCAGATGTTTATATCGAGCCATGGGACCTTA
CAATGTAGCAGTGCCTTCAGATGTATCCCATGCCCGCTTTTATTTCCTGTTTCACCGCCCATTACGAGTG
CTGAACCTGCTTATCCTCATTGAAGGCAGTGTTGTCTTCTACCAGCTGTATTCCTTGCTGCGGTCGGAGA
AGTGGAACCACACGCTCTCCATGGCCCTCATCCTTTTCTGCAACTACTATGTTTTATTTAAGCTCCTCCG
GGACAGAATAGTCTTAGGCAGGGCATACTCCTACCCCCTCAACAGTTACGAACTCAAGGCCAACTAA

Translation (418 aa):
MPSRRRGPSRQQLSRSALPSIQTLVGGGCGNGTGLRNRNGNAIGLPVPPTTALITPGPVRHCQIPDLPVD
GSLFFEFLFFIYLLIVLFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYYLAAFITVMLARRLVWALISE
ATKAGAASTVHYTALILARLVLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPCPLSPDLIRNEVECLKAD
FNHRIKEVLFNSLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSA
AHLGKWQKLEHGFYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRV
LNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIVLGRAYSYPLNSYELKAN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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