NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16639.1 Public Mus musculus 2 Ppip5k1 23 108 98 CCDS HistoryNCBI Gene:327655Re-query CCDS DB by CCDS ID:16639.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052029.9 ENSMUSP00000057632.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052029.9Link to Ensembl Protein Viewer:ENSMUSP00000057632.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052029Re-query CCDS DB by Protein ID:ENSMUSP00000057632
Original member Current member EBI ENSMUST00000110626.7 ENSMUSP00000106256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110626.7Link to Ensembl Protein Viewer:ENSMUSP00000106256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110626Re-query CCDS DB by Protein ID:ENSMUSP00000106256
Original member NCBI NM_178795.4 NP_848910.3 Updated not alive Link to Nucleotide Sequence:NM_178795.4Link to Protein Sequence:NP_848910.3Re-query CCDS DB by Nucleotide ID:NM_178795Re-query CCDS DB by Protein ID:NP_848910
Current member NCBI NM_178795.5 NP_848910.3 Accepted alive Link to Nucleotide Sequence:NM_178795.5Link to Protein Sequence:NP_848910.3Re-query CCDS DB by Nucleotide ID:NM_178795Re-query CCDS DB by Protein ID:NP_848910Link to BLAST:NP_848910.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848910.3 1436 A2ARP1-1 1436 100% 0 0

Chromosomal Locations for CCDS 16639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121311656 121312482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121316655 121316768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121321655 121321792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121326852 121326914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121327645 121327770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121331558 121331648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121334413 121334577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121334723 121334836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121336396 121336503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121336726 121336840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121337083 121337210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121337449 121337672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121337822 121337963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121340751 121340933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121341616 121341737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121341905 121342036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121342577 121342659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121342755 121342864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121342961 121343036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121343139 121343225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121343476 121343577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121347264 121347385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121347481 121347642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121348467 121348568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121348694 121348848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121349174 121349259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121349475 121349565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121349947 121350142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121350477 121350623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4311 nt):
ATGTGGTCCTTGACGGCCAATGAGGACGAGAGCACTACGGCCCACTTCTTCCTTGGAGCTGGAGATGAGG
GGTTGGGCACCTGTGGAATAGGCATGAGGACAGAAGAGAGTGACAGTGAACTCCTTGAGGACGAGGAGGA
TGAGGTGCCCCCAGAACCTCAAATTATTGTTGGCATCTGTGCCATGACCAAGAAATCCAAGTCCAAGCCA
ATGACCCAAATTCTAGAGCGACTCTGCAGATTTGACTACCTGACCGTTGTCATCCTGGGAGAAGATGTGA
TCCTAAATGAACCTGTGGAGAACTGGCCGTCCTGCCACTGCCTCATCTCTTTCCACTCCAAAGGCTTTCC
TCTCGACAAAGCTGTGGCTTACTCCAAGCTTCGAAACCCCTTCCTTATCAATGACTTGGCCATGCAGTAT
TACATCCAAGATAGGAGGGAGGTGTACCGGATCCTACAGGAGGAAGGTATTGATCTGCCAAGATATGCTG
TCCTCAACCGTGACCCCGCCTGTCCTGAGGAGTGCAGCCTGATAGAAGGTGAAGACCAGGTGGAGGTTAA
TGGAGCTGTTTTTCCCAAGCCCTTTGTGGAGAAGCCAGTGAGTGCAGAGGACCACAATGTTTACATCTAC
TACCCCAGCTCTGCTGGAGGAGGAAGCCAGCGCCTCTTCCGTAAGATCGGCAGCCGGAGCAGCGTGTACT
CTCCTGAGAGCAGTGTGCGGAAGACAGGATCATACATCTATGAGGAGTTCATGCCGACAGATGGCACAGA
TGTTAAGGTGTACACAGTGGGGCCAGATTATGCCCATGCTGAAGCTAGAAAGTCTCCAGCTTTGGATGGG
AAGGTTGAACGAGACAGTGAGGGGAAAGAGGTTCGATATCCAGTCATGTTGACCGCCATGGAAAAGCTGG
TGGCCAGGAAGGTCTGCGTAGCTTTTAAGCAAACAGTTTGTGGATTTGACCTTCTTCGGGCCAATGGTCA
CTCTTTTGTGTGTGACGTCAATGGCTTTAGCTTTGTCAAGAACTCGATGAAGTACTATGATGACTGTGCC
AAGATTCTGGGGAACACTATTATGCGAGAGCTTGCCCCGCAGTTCCAGATACCGTGGTCCATCCCCACAG
AAGCTGAGGACATTCCCATTGTCCCTACCACATCTGGCACTATGATGGAACTCCGTTGTGTCATCGCGAT
CATCCGTCATGGAGATAGAACCCCAAAGCAGAAGATGAAGATGGAGGTGACGCACCCGAGGTTTTTTGCT
CTATTTGAAAAACATGGTGGATATAAGACGGGAAAATTAAAACTTAAGCGGCCGGAGCAGCTCCAGGAGG
TGCTGGACATTACGAGGCTGCTGTTGGCAGAGCTGGAGAAGGAGCCAGAAGCCGAGATTGAGGAGAAGAC
TGGGAAGCTCGAGCAGCTGAAGTCCGTGCTGGAGATGTATGGTCACTTCTCAGGTATTAATCGGAAGGTG
CAGTTGACCTACTACCCCCACGGAGTGAAAGCGTCGAACGAGGGGCAAGATCTGCAGAGAGAGCCACTAG
CACCCTCTCTCTTGCTGGTGCTGAAGTGGGGTGGAGAGCTGACACCCGATGGCCGTGTTCAGGCTGAAGA
GCTGGGGCGAGCTTTCCGCTGCATGTATCCCGGAGGCCAGGGTGACTATGCCGGCTTCCCCGGCTGTGGG
CTGCTTCGCCTCCATAGCACTTTCCGTCATGACCTCAAGATCTACGCCTCTGATGAGGGCCGCGTCCAGA
TGACTGCTGCTGCCTTTGCAAAGGGCCTCTTAGCTCTAGAAGGGGAGCTTACACCCATTTTGGTACAAAT
GGTGAAGAGTGCCAACATGAATGGCCTTCTGGACAGTGACAGCGACTCCCTAAGCAGCTGCCAGCACCGT
GTGAAGGCGCGACTGCACCACATTTTGCAGCAGGATGCACCCTTTGGCCCTGAGGACTATGACCAGCTGG
CTCCAACTGGAAGCACGTCTCTGCTCAACTCCATGTCTGTAATCCAGAATCCCGTGAAAGTCTGTGATCA
GGTATTTGCCCTGATTGAAAACCTTACCCACCAGATTCGGGAACGGATGCAAGACCCCAGCTCTGTAGAC
CTGCAGCTCTACCACAGTGAGACACTAGAGCTAATGCTACAGCGTTGGAGCAAACTAGAGCGTGACTTTC
GACAAAAGAGCGGGCGCTATGATATCAGTAAGATCCCTGATATCTATGACTGTGTCAAGTATGATGTGCA
ACACAACGGGAGTCTGGGACTTCAAGGCACAGCCGAGTTACTCCGTCTTTCCAAAGCTCTGGCTGACGTG
GTCATTCCCCAGGAGTATGGGATCAGTAGAGAGGAGAAAGTGGAGATTGCTGTGGGCTTCTGCCTTCCAC
TGCTGCGGAAAATCCTACTTGACCTGCAGAGAACTCACGAGGATGAGTCTGTCAACAAGCTGCATCCCCT
GTACTCACGTGGAGTGCTCTCCCCAGGCCGCCATGTTCGAACTCGGCTCTATTTCACCAGTGAGAGTCAT
GTTCACTCCTTACTCAGTGTCTTCCGTTATGGGGGACTTCTCGATGAGACCCAGGATGCCCAGTGGCAGC
GAGCCTTGGCTTATCTCAGTGCCATCTCAGAGCTGAACTACATGACCCAGATTGTTATCATGCTTTATGA
GGACAACACGAGGGACCCCTTGTCAGAGGAGCGGTTCCATGTGGAGCTACATTTCAGCCCTGGAGTGAAA
GGAGTTGAGGAAGGCAGTGCCCCAGCCGGCTGTGGATTCCGTCCAGCCTCATCTGAGAATGAAGAGATGA
AAACAGATCCAGGCAGCATTGAGAACCTGTGCCCAGGGAAGGCATCCGATGAACCAGACCGAGCACTGCA
GACCTCACCCCAACCTGTTGAGGGCACTGGCCTCCCGAGGAGATCACCCCTCATTCGTAATCGAAAAGCT
GGTTCCATGGAGGTGCTGTCTGAAACTTCATCTTCAAGACCTGGTGGCTACCGTCTGTTTTCATCTTCAC
GGCCACCAACAGAGATGAAGCAGAGTGGCCTAGGCTCACAGTGTACAGGGCTGTTCAGCACCACAGTGCT
GGGTGGCTCCTCCAGTGCTCCGAATCTTCAGGACTACGCCCGCACCCATGGCAAAAAGCTCCCGCCTGCC
AGTCTAAAGCACCGAGATGAGCTCTTGTTTGTCCCGGCCGTAAAACGATTTTCTGTGTCGTTTGCAAAGC
ATCCGACTAACGGATTTGAAGGGTGCTCCATGGTACCTACCATCTACCCCCTGGAGACACTGCACAATGC
CCTTTCCTTGCGCCAAGTGAGTGAATTCTTGACTAAAGTCTGCCAGCGCCACACTGATGCCCACGCACAG
GCATCTGCAGCCCTCTTTGACTCTATGCACAACCATCAGGCCTCAGATAGCCCGTTCTCCCCACCCCGCA
CTCTTCATTCGCCACCCCTGCAACTTCGGCATCGCTCTGAAAAGCCACCTTGGTACAGCAGCGGGCCTTC
CAGTACTGTGTCCAGTGCTGGCCCTTCCTCTCCTACTACAGTAGATGGAAACTCACACTTTGGCTTCAGT
GATCAGTCCTCTGTAAATATACATATGACTGAAGAAAAGCAAGGCTTTGGGTTGCTCCAGGAGACTCCTG
GAGATGGAACACGAGAGCTCCATATAGAAAGACAGCAAGAGCTTGTTGAGCCAGCTCAGTCCCCTCAAGA
GCTACCTGTGGAAATCTGCCCTTCAGGAAGTCAGGGTGTTACCAAGGTCAGCCAGACATGCCAGGAGGTC
CCGGACATCGTCCAGCCGTGTCACAACATCCATGAGGAGATTGGCCAGCCTCAGCAGGAGGTCCCTGACA
TCAGCCAGCTGTTGCTGAAGGACCATGACACTACTACCAACACGTGCCACCTGTGCCAGGCCAGCCAGCT
GTCTCAGAAAGTTTGTGAGGAAATTTGCCAGCTTTGTCAAGACAACCATGAGGAGAGTAACCAACTATGC
CAGGAAGTCTCAGTAAAGCTGGGCAGGATGGTCCATGGATTCCCTGTAAATGTTGATAGCACGGCCCAGG
AAACCCTTATGGAAATTGGCAGACCAACCCAAGAGATCCCTGAAGATCCATACCAGGAGTTCTCTGTGAA
GGTTGGCGTGCTGGCTCAGAAGGCCCCTGCCATCAGTGAGCTATCTCAAGACATCCCTGAGGCTGACAAA
CCATCCCAAGAGCTCTCTGAGGAGACTGAGCTGCAGGCTCAGGAGGTCTCTGAGGAGATTGATCAGGAGT
CTGAGGTGGTTGATGAGCTGCCTCCTGAGGCTATCTCCTAA

Translation (1436 aa):
MWSLTANEDESTTAHFFLGAGDEGLGTCGIGMRTEESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKP
MTQILERLCRFDYLTVVILGEDVILNEPVENWPSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQY
YIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECSLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIY
YPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDG
KVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCA
KILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFA
LFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPEAEIEEKTGKLEQLKSVLEMYGHFSGINRKV
QLTYYPHGVKASNEGQDLQREPLAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCG
LLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHR
VKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVD
LQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADV
VIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESH
VHSLLSVFRYGGLLDETQDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVK
GVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPGKASDEPDRALQTSPQPVEGTGLPRRSPLIRNRKA
GSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPA
SLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQ
ASAALFDSMHNHQASDSPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFS
DQSSVNIHMTEEKQGFGLLQETPGDGTRELHIERQQELVEPAQSPQELPVEICPSGSQGVTKVSQTCQEV
PDIVQPCHNIHEEIGQPQQEVPDISQLLLKDHDTTTNTCHLCQASQLSQKVCEEICQLCQDNHEESNQLC
QEVSVKLGRMVHGFPVNVDSTAQETLMEIGRPTQEIPEDPYQEFSVKVGVLAQKAPAISELSQDIPEADK
PSQELSEETELQAQEVSEEIDQESEVVDELPPEAIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH