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Report for CCDS56777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56777.1 Public Mus musculus 11 Jmjd4 23 108 98 CCDS HistoryNCBI Gene:194952Re-query CCDS DB by CCDS ID:56777.1Re-query CCDS DB by GeneID:194952See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045279.12 ENSMUSP00000043473.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045279.12Link to Ensembl Protein Viewer:ENSMUSP00000043473.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045279Re-query CCDS DB by Protein ID:ENSMUSP00000043473
Original member Current member NCBI NM_001205068.1 NP_001191997.1 Accepted alive Link to Nucleotide Sequence:NM_001205068.1Link to Protein Sequence:NP_001191997.1Re-query CCDS DB by Nucleotide ID:NM_001205068Re-query CCDS DB by Protein ID:NP_001191997Link to BLAST:NP_001191997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191997.1 415 Q8BFT6-3 415 100% 0 0

Chromosomal Locations for CCDS 56777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59450245 59450512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59450675 59450840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59453511 59453645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59453828 59454059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59454933 59455079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59455307 59455606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGATCGGGAGACACGCACCTTTGCCGAGCGGTACTACCGGGACCTCCGAGACCCAGTCCCTAGCGGCG
GTGGCGGCCCCACACCCAGCGGCGTGACCTTCATTCAGACCCCGAACGCCTTCTCCTATGCTGACTTCGT
GAAGGGCTTCCTGCTGCCTAACCTGCCCTGCGTGTTTTCTAGCGCCTTCACCGAGGGCTGGGGCAGCAGG
CGGCGCTGGGTGACCTCGGAGGGAAAGCCTGACTTCGAGTATCTGCAGCAGAAGTATGGAGACGCGGTTG
TACCGGTTGCCAACTGTGGAGTGCGAGAATACAATTCAAACCCCAAGGAGCACATGTCCTTCCGCGACTA
TATCAGTTACTGGAAGGACTACATCCAAGGGAGTTACTCCTCTTCGCGGGGCTGCCTCTACCTCAAGGAC
TGGCATCTGTGCAGAGACTCCTTGGTGAATGACTTGGAAGACATATTCACCCTGCCCGTGTACTTCTCGT
CAGACTGGCTGAATGAGTTCTGGGACGTCCTCAATGTGGATGACTATCGTTTTGTCTATGCAGGCCCCAG
GGGCACCTGCTGGTCAGTCAACATCTGTGGGAAGAAGAAATGGTTGTTCTTCCCGCCAGGCGAGGAGGAA
GCCCTCCGGGACTGCCATGGTAACCTGCCCTATGATGTGACTTCCACTGAGCTCCTGGACACCCACCTGT
ATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTGAGATGGTGTTTGTGCC
CAGCGGGTGGCACCATCAAGTGTACAACCTGGATGACACCATTTCTATTAACCACAACTGGGTCAATGGC
TGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAAT
GGAAGGACTCCATGCCTGACTGGCACCACCACTGCCAGGTCATCATGAAGTCCTGCACAGGGATCAATTT
TGAAGAATTTTACCATTTCCTCAAAGTCATCGCCGAGAAGAGGCTCCTTGTCCTGGAGCAAGGACTGAAG
GGGGATTCAGGGGACAGCCGGAGCCTAGACCTGGGCCTACAGCAGGCTGCATTTGATATTGGCCGCCTTG
CAGATGTGCTGGCCTCTGTGGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAGCGCATTCTCACCACA
GCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGCAGTGGCTGCTGCAGAGGCCCTTTAG

Translation (415 aa):
MDRETRTFAERYYRDLRDPVPSGGGGPTPSGVTFIQTPNAFSYADFVKGFLLPNLPCVFSSAFTEGWGSR
RRWVTSEGKPDFEYLQQKYGDAVVPVANCGVREYNSNPKEHMSFRDYISYWKDYIQGSYSSSRGCLYLKD
WHLCRDSLVNDLEDIFTLPVYFSSDWLNEFWDVLNVDDYRFVYAGPRGTCWSVNICGKKKWLFFPPGEEE
ALRDCHGNLPYDVTSTELLDTHLYPKIQHHSLPIEVIQEPGEMVFVPSGWHHQVYNLDDTISINHNWVNG
CNLPNMWHFLQQELQAVQHEVEEWKDSMPDWHHHCQVIMKSCTGINFEEFYHFLKVIAEKRLLVLEQGLK
GDSGDSRSLDLGLQQAAFDIGRLADVLASVVVNPDFQRVDTSAFSPQPEELLQQLEDAVAAAEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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