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Report for CCDS24936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24936.1 Public Mus musculus 11 Clec10a 23 108 98 CCDS HistoryNCBI Gene:17312Re-query CCDS DB by CCDS ID:24936.1Re-query CCDS DB by GeneID:17312See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102571.9 ENSMUSP00000099631.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102571.9Link to Ensembl Protein Viewer:ENSMUSP00000099631.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102571Re-query CCDS DB by Protein ID:ENSMUSP00000099631
Original member Current member NCBI NM_010796.3 NP_034926.1 Accepted alive Link to Nucleotide Sequence:NM_010796.3Link to Protein Sequence:NP_034926.1Re-query CCDS DB by Nucleotide ID:NM_010796Re-query CCDS DB by Protein ID:NP_034926Link to BLAST:NP_034926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034926.1 304 P49300 304 100% 0 0

Chromosomal Locations for CCDS 24936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70167944 70168004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70168586 70168696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169129 70169224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169308 70169379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169459 70169530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169736 70169822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169926 70170077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70170160 70170266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70170418 70170574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGATATACGAAAACCTCCAGAACTCAAGGATCGAGGAGAAAACCCAAGAGCCTGGTAAAGCTCCTTCCC
AGTCCTTCCTGTGGCGCATCCTCTCTTGGACCCACCTCCTCCTGTTCTCCCTGGGCCTCAGCCTCCTGCT
GTTGGTGGTCGTCTCCGTGATTGGATCCCAAAATTCCCAGTTAAGGAGGGACCTAGGCACCCTGAGAGCC
ACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACTCCAGGGCTGACAGCTTCG
AAAAAGGGATCAGTTCTCTGAAAGTGGATGTGGAGGATCACAGGCAGGAACTGCAGGCAGGCCGAGACTT
GAGCCAGAAGGTGACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCT
GATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCAGCTGGCCAACCTCA
AGAACAACGGCTCGGAAGTGGCCTGCTGCCCGCTTCACTGGACGGAGCATGAAGGCAGCTGCTATTGGTT
CTCTGAGTCTGAGAAGTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGAGAATTCTCACCTGGTGGTG
GTCAACTCCCTGGAGGAGCAGAATTTTCTACAGAATCGCTTAGCCAATGTGGTTAGTTGGATCGGCCTAA
CGGACCAAAACGGGCCCTGGCGATGGGTGGATGGGACCGACTTTGAGAAAGGCTTTAAGAACTGGGCCCC
ACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGGTGAGGACTGTGCCCACATCACTACAGGT
GGTCCCTGGAATGATGATGTCTGCCAGAGAACCTTCCGCTGGATCTGTGAGATGAAGCTGGCCAAGGAGA
GCTAG

Translation (304 aa):
MIYENLQNSRIEEKTQEPGKAPSQSFLWRILSWTHLLLFSLGLSLLLLVVVSVIGSQNSQLRRDLGTLRA
TLDNTTSKIKAEFQSLDSRADSFEKGISSLKVDVEDHRQELQAGRDLSQKVTSLESTVEKREQALKTDLS
DLTDHVQQLRKDLKALTCQLANLKNNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSHLVV
VNSLEEQNFLQNRLANVVSWIGLTDQNGPWRWVDGTDFEKGFKNWAPLQPDNWFGHGLGGGEDCAHITTG
GPWNDDVCQRTFRWICEMKLAKES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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