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Report for CCDS10940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10940.1 Public Homo sapiens 16 NECAB2 24 110 108 CCDS HistoryNCBI Gene:54550Re-query CCDS DB by CCDS ID:10940.1Re-query CCDS DB by GeneID:54550See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305202.9 ENSP00000307449.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305202.9Link to Ensembl Protein Viewer:ENSP00000307449.4Re-query CCDS DB by Nucleotide ID:ENST00000305202Re-query CCDS DB by Protein ID:ENSP00000307449
Original member Current member NCBI NM_019065.3 NP_061938.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019065.3Link to Protein Sequence:NP_061938.2Re-query CCDS DB by Nucleotide ID:NM_019065Re-query CCDS DB by Protein ID:NP_061938Link to BLAST:NP_061938.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061938.2 386 Q7Z6G3-1 386 100% 0 0

Chromosomal Locations for CCDS 10940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 83968649 83968849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83972151 83972175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83978444 83978552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83980839 83980864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83981030 83981127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83990494 83990630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83994302 83994420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83994609 83994688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83997216 83997269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 83998205 83998317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84000724 84000801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84001825 84001916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84002318 84002346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTGCGAGCGGGCGGCGCGCCTGTGCAGGGCCGGCGCGCACAGGCTGCTCCGGGAGCCGCCGCAGCAGG
GCCGGGCGCTGGGCGGGCTGCTGCGCTGGGTGGGCGCCAGGATGGGCGAGCCCCGGGAGTCGCTGGCCCC
CGCCGCCCCCGCGGACCCCGGCCCAGCCTCGCCGCGCGGGGGCACCGCCGTCATCCTGGACATTTTCCGC
CGTGCGGACAAAAATGATGATGGGAAGCTGTCCTTGGAGGAATTCCAGCTCTTCTTTGCAGATGGCGTCC
TTAATGAGAAAGAACTGGAGGATCTCTTTCACACGATTGACTCTGACAACACCAACCATGTGGACACCAA
GGAGCTGTGTGATTACTTTGTGGACCACATGGGTGACTATGAGGATGTCCTGGCCTCCCTGGAGACCTTG
AATCACTCTGTCCTGAAGGCCATGGGTTATACCAAGAAGGTATATGAGGGTGGGAGCAACGTGGACCAGT
TTGTGACCCGCTTCCTCCTGAAGGAGACGGCCAATCAGATCCAGTCGCTGCTGAGCTCAGTGGAGAGTGC
GGTGGAGGCCATCGAGGAACAGACCAGCCAGCTCCGACAGAACCACATCAAACCCAGCCACAGCGCGGCA
CAGACCTGGTGTGGAAGCCCCACTCCCGCCTCTGCCCCCAACCACAAGCTCATGGCTATGGAACAAGGCA
AGACCCTTCCATCTGCCACGGAGGATGCAAAGGAAGAGGGTCTGGAAGCCCAGATCAGCCGCTTGGCAGA
GCTGATTGGGAGGCTGGAGAGCAAAGCACTGTGGTTCGACCTGCAGCAGCGCCTGTCAGATGAAGATGGC
ACCAACATGCACCTGCAGCTGGTCCGGCAGGAGATGGCCGTGTGCCCCGAGCAACTGAGCGAGTTTCTGG
ACTCTCTGCGCCAGTATCTGCGGGGGACCACTGGCGTGAGGAACTGCTTCCACATCACTGCCGTGAGGCT
CTCAGATGGCTTCACCTTTGTCATCTATGAGTTCTGGGAGACAGAGGAGGCGTGGAAGAGGCACCTGCAG
AGCCCCCTGTGTAAGGCGTTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGCCCTCTCCAGGA
TCTTGGTGCCAGCTGCTTGGTGCACGGTGGGACGGGACTGA

Translation (386 aa):
MCERAARLCRAGAHRLLREPPQQGRALGGLLRWVGARMGEPRESLAPAAPADPGPASPRGGTAVILDIFR
RADKNDDGKLSLEEFQLFFADGVLNEKELEDLFHTIDSDNTNHVDTKELCDYFVDHMGDYEDVLASLETL
NHSVLKAMGYTKKVYEGGSNVDQFVTRFLLKETANQIQSLLSSVESAVEAIEEQTSQLRQNHIKPSHSAA
QTWCGSPTPASAPNHKLMAMEQGKTLPSATEDAKEEGLEAQISRLAELIGRLESKALWFDLQQRLSDEDG
TNMHLQLVRQEMAVCPEQLSEFLDSLRQYLRGTTGVRNCFHITAVRLSDGFTFVIYEFWETEEAWKRHLQ
SPLCKAFRHVKVDTLSQPEALSRILVPAAWCTVGRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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