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Report for CCDS38818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38818.1 Public Mus musculus 4 Alg6 23 108 98 CCDS HistoryNCBI Gene:320438Re-query CCDS DB by CCDS ID:38818.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097961.8 ENSMUSP00000095574.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097961.8Link to Ensembl Protein Viewer:ENSMUSP00000095574.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097961Re-query CCDS DB by Protein ID:ENSMUSP00000095574
Original member Current member NCBI NM_001081264.1 NP_001074733.1 Accepted alive Link to Nucleotide Sequence:NM_001081264.1Link to Protein Sequence:NP_001074733.1Re-query CCDS DB by Nucleotide ID:NM_001081264Re-query CCDS DB by Protein ID:NP_001074733Link to BLAST:NP_001074733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074733.1 507 Q3TAE8 507 100% 0 0

Chromosomal Locations for CCDS 38818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99719152 99719233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99726863 99726947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99738124 99738213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99739214 99739302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99741534 99741616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99742355 99742419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99743755 99743940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99744490 99744625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99746326 99746411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99748686 99748770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99750729 99750799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99752817 99752885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99752993 99753191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99761871 99762068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGAGAGCTGGCCGTGGATGGCAGTCGTGGTCTTACTAGGACTTACGGTGCGGTGGACGGTCTCTCTCA
GT
TCCTACTCAGGTGCTGGAAAACCACCTATGTTTGGTGATTATGAAGCTCAGAGGCACTGGCAGGAAAT
T
ACCCTTAATTTACCAGTCAAACAGTGGTATTTTAACAGTAGTGATAACAATTTACTGTACTGGGGATTG
GAT
TACCCACCTCTTACGGCCTATCATAGCCTCTTATGTGCATATGTGGCAAAGTTTATAAACCCAGACT
GG
GTTGCTCTCCACACATCACGAGGCTATGAGAGTCAGGCACACAAGCTCTTCATGCGTGCCACAGTTCT
T
GCTGCTGATTTGCTCATTTACGTACCCGCGGTGCTTTTGTACTGTTACTCCTTAAAAGAAATCTCACCT
AAG
AGAAAGATTGCTAGTGCGTTATGCATATTGCTGTATCCAGGTCTTATTCTTATCGACTATGGACATT
TT
CAATATAATTCTGTGAGTCTTGGCTTTGCGTTGTGGGGTGTTCTTGGAGTATCTTGGGACTGGGACCT
G
CTAGGGTCACTGGCATTTTGCTTAGCTCTAAATTATAAGCAGATGGAACTTTACCACTCCCTGCCATTT
TTT
TGCTTTTTACTTGGCAAGTGTTTTAAAAAAGGCCTCAAAGGAAAGGGGCTTGCATTGTTCATTAGGA
TA
GCCTGTACTGTCCTGGCTTCTTTCCTTCTGTGTTGGCTGCCGTTCTTGACAGAAAGGGAGCATGCCCT
G
CAGGTTGTTAGAAGACTCTTCCCTGTTGACCGTGGACTGTTTGAGGATAAAGTCGCTAATATTTGGTGC
AGC
GTTAATGTCTTTCTGAAGATTAAGGACACTTTGCCTCGCCACATCCAGATAGCGATCAGCTTTTGCT
TT
ACACTTTTGAGCTTGCTTCCTGCATGTATAAAACTGACAGTTCGACCCTCTTGTAAAGGATTCAGATT
T
ACTCTGGTTAGCTGTGCGCTATCATTCTTTCTGTTTTCTTTCCAAGTACATGAAAAGTCCATTCTCTTG
GTA
TCATTACCAGTTTGCTTAGTTTTAACTGAAATTCCTTTCATGTCAACCTGGTTTTTACTAGTTTCAA
CA
TTTAGCATGCTGCCTCTTCTATTAAAGGATGAACTCCTGCTGCCCTCGGTTGTGACAGTGATGGCATT
T
GTAATAGCTTGTGGCACTTTCTTTCCAATGTTGGAGAACACTTCCGAAGAACAACTGCAGTTGAAGTCC
TTT
GCTGTCTCTGTAAGGAGGCACCTTCCGGGCTTCACATTTTTGCCCAGAATTATGCAGTGTTTGTTTC
TT
TCTTCAGTCATCACCATGGTCCTCCTGACGATTTTGAGTGTAACACTGGACCCTCCTCAGAAATTACC
A
GACTTGTTTCCTGTACTTATATGTTTTGTTTCCTGTGTAAATTTTGTATTCTTCTTGGTATACTTTAAT
ATT
GTAATCATGTGGGATTCCAAAAATGGAAGAAATCGGAAGAAAATTGAGTAG


Translation (507 aa):
MESWPWMAVVVLLGLTVRWTVSLSSYSGAGKPPMFGDYEAQRHWQEITLNLPVKQWYFNSSDNNLLYWGL
D
YPPLTAYHSLLCAY
VAKFINPDWVALHTSRGYESQAHKLFMRATVLAADLLIYVPAVLLYCYSLKEISP
K
RK
IASALCILLYPGLILIDYGHFQYNSVSLGFALWGVLGVSWDWDLLGSLAFCLALNYKQMELYHSLPF
F
CFLLGKCFKKGLKGK
GLALFIRIACTVLASFLLCWLPFLTEREHALQVVRRLFPVDRGLFEDKVANIWC
S
VNVFLKIKDTLPRHIQIAI
SFCFTLLSLLPACIKLTVRPSCKGFRFTLVSCALSFFLFSFQVHEKSILL
V
S
LPVCLVLTEIPFMSTWFLLVSTFSMLPLLLKDELLLPSVVTVMAFVIACGTFFPMLENTSEEQLQLKS
F
AVSVRRHLPGFTFLPRIMQCL
FLSSVITMVLLTILSVTLDPPQKLPDLFPVLICFVSCVNFVFFLVYFN
I
VIMWDSKNGRNRKKIE




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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