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Report for CCDS21056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21056.1 Public Mus musculus 7 Rinl 23 108 98 CCDS HistoryNCBI Gene:320435Re-query CCDS DB by CCDS ID:21056.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059857.7 ENSMUSP00000058447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059857.7Link to Ensembl Protein Viewer:ENSMUSP00000058447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059857Re-query CCDS DB by Protein ID:ENSMUSP00000058447
Original member Current member EBI ENSMUST00000209035.1 ENSMUSP00000146576.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209035.1Link to Ensembl Protein Viewer:ENSMUSP00000146576.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209035Re-query CCDS DB by Protein ID:ENSMUSP00000146576
Original member Current member NCBI NM_001358916.1 NP_001345845.1 Accepted alive Link to Nucleotide Sequence:NM_001358916.1Link to Protein Sequence:NP_001345845.1Re-query CCDS DB by Nucleotide ID:NM_001358916Re-query CCDS DB by Protein ID:NP_001345845Link to BLAST:NP_001345845.1
Original member Current member NCBI NM_177158.5 NP_796132.2 Accepted alive Link to Nucleotide Sequence:NM_177158.5Link to Protein Sequence:NP_796132.2Re-query CCDS DB by Nucleotide ID:NM_177158Re-query CCDS DB by Protein ID:NP_796132Link to BLAST:NP_796132.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345845.1 563 Q80UW3-1 563 100% 0 0
NP_796132.2 563 Q80UW3-1 563 100% 0 0

Chromosomal Locations for CCDS 21056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28790359 28790411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28790591 28790750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28792237 28792339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28794822 28794894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28794978 28795042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28795658 28795804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28795891 28796346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28796653 28796946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28797110 28797241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28797560 28797723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28797810 28797854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGAGGCTAGCCCAGCCGGACATGGTGTCTGCAGCCCCTACTGAAGTGGACAGGCTGGTTTGGCCACTAG
CGGATGGAGCAGACAAGAGCCCACTAGGGGTCCTCAGCACCACAGAGCCACTTCTTCGACTGCAGAGGAC
ACAGAGAGTGTGGGAGGTCCCCGAGCTGGATGCTCAGTATGCCAAGGCCTTTCTAGAGCTGTGGCCACTG
GGGAGCTTCCTGGTCATCGGACATGAGCCTGGCCAGGTCCTGATGTTGAAGGCAGGACCTTCTTCAGGAG
ATATCAACACCTATCAAATTCAGAGGTTTCCTGGAGGTGTGTCCCTGGAATCCTCCAACCTCTGCATGCC
CGACTGTCCCCATCTCCTGGCCTTTCTGTCAGCCAGCAGGGACGTTTTGCCAAGGACCCTGCTCTTGCCC
ACGCCTACTGTGGGGGCTGGAGATAATCACTCAGATCCCCATCGGCTTGGCTGCATCCAGGTGGACACCT
CAGGGAGGGTGCTGTCTGTAGTGAACCAGCTCTACCTGGAGACACATGGAGGCTGGGGAACAGAGACTCC
ACAGCAAACAGAGCCAGAGACTGGACAGAAATACAGTCTAGCCCCCAGGAAGCCCACCCCACACCGGGTC
TCCTGGGTGGAAGACCCTTTGAGACCGGAAGCTCACCATACTGGACAGGAAGTGCATCATCCTGGAGCAG
ACGCTCACTCCCTTGGGTCGGAAGTGCACTTTTCCTGTCCTGCTCTAGAAGAGGAGGAAGTGAACAACGA
CTGCTACAAAGATGAAGACGAGGAAGGTTGCGAGGATATGCTCACTGCCCACATCCGTGCTCTGGCCAGG
ACCCGGAGCAGCTATGTAGCCAGGCAGTACCGATGCCTTCGGGCACGCCTCATCTCAGATTCTGGAAATC
CCTACAGCCCAGGGGACCCGGCCACAGAGCTGCTTCAGGATGTGCGCCAGCTCCTCACTGACCTCCAGAA
TTACCTGGCAAAAGACCCCGACGTCAGAGCTGTCTTTGGGAACAGGGGACCTAGCATCCTTCGGGAAGAA
GATCTTGGCCCCGCTGTGGAGGTGGCCCTGTGTCGAGCGGTTCTAGAGCCCCTGAAGCCCGCCCTGTGGA
CCAAACTCCGAACTCTCAGAGCCCAGGAACTACGACGACTGCGCAGGCGCCAAATAGCCTTGAGGGTAGG
AGCGGGGCCTGAGGGACAGAGCCCGGCCTTGCGGAACCGGAACCGTATCCACGCACGCCTTGCTCACTTG
CATGCGGCGTGCGCCCCGCGCCGCAAGGTGGCGCTGTTGCTGGCGGTGTGCAGCGACGTCTACGCGGGCC
TAGGCGGTGGCGAGAATAAAGAGCCCCTGGGGGCTGACGCCTTTTTACCTGCCCTGACCGAGGAGCTGAT
CTGGAGTCCACATATTGGGGAAACACAGCTGGATGTGGAGTTTCTTATGGAGCTCTTGGATCCAGGGGAG
TTGCGAGGAGAAGCTGGGTATTATCTGACCACGTGGTTTGGGGCTCTCTACCACATTGCTCACTACCAGC
CAGACACTGGCCGTGCACCCCAGGGGCTCAGCTCCGAGGCCCGGGCCTCCCTGCGCCAGTGGCATCGAAG
ACGGACACTGCACCAGCAAGCCCAGCCCACAGCCCAGGCCAACCAGCCTTTTGAGGAGCCATGGGCAATA
GGGGACCCATGA

Translation (563 aa):
MRLAQPDMVSAAPTEVDRLVWPLADGADKSPLGVLSTTEPLLRLQRTQRVWEVPELDAQYAKAFLELWPL
GSFLVIGHEPGQVLMLKAGPSSGDINTYQIQRFPGGVSLESSNLCMPDCPHLLAFLSASRDVLPRTLLLP
TPTVGAGDNHSDPHRLGCIQVDTSGRVLSVVNQLYLETHGGWGTETPQQTEPETGQKYSLAPRKPTPHRV
SWVEDPLRPEAHHTGQEVHHPGADAHSLGSEVHFSCPALEEEEVNNDCYKDEDEEGCEDMLTAHIRALAR
TRSSYVARQYRCLRARLISDSGNPYSPGDPATELLQDVRQLLTDLQNYLAKDPDVRAVFGNRGPSILREE
DLGPAVEVALCRAVLEPLKPALWTKLRTLRAQELRRLRRRQIALRVGAGPEGQSPALRNRNRIHARLAHL
HAACAPRRKVALLLAVCSDVYAGLGGGENKEPLGADAFLPALTEELIWSPHIGETQLDVEFLMELLDPGE
LRGEAGYYLTTWFGALYHIAHYQPDTGRAPQGLSSEARASLRQWHRRRTLHQQAQPTAQANQPFEEPWAI
GDP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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