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Report for CCDS15315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15315.1 Public Mus musculus 1 Ptpn7 23 108 98 CCDS HistoryNCBI Gene:320139Re-query CCDS DB by CCDS ID:15315.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049449.10 ENSMUSP00000045803.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049449.10Link to Ensembl Protein Viewer:ENSMUSP00000045803.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049449Re-query CCDS DB by Protein ID:ENSMUSP00000045803
Original member Current member EBI ENSMUST00000167080.2 ENSMUSP00000129474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167080.2Link to Ensembl Protein Viewer:ENSMUSP00000129474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167080Re-query CCDS DB by Protein ID:ENSMUSP00000129474
Original member Current member EBI ENSMUST00000187985.6 ENSMUSP00000141133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187985.6Link to Ensembl Protein Viewer:ENSMUSP00000141133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187985Re-query CCDS DB by Protein ID:ENSMUSP00000141133
Original member Current member NCBI NM_001356382.1 NP_001343311.1 Accepted alive Link to Nucleotide Sequence:NM_001356382.1Link to Protein Sequence:NP_001343311.1Re-query CCDS DB by Nucleotide ID:NM_001356382Re-query CCDS DB by Protein ID:NP_001343311Link to BLAST:NP_001343311.1
Original member Current member NCBI NM_177081.4 NP_796055.1 Accepted alive Link to Nucleotide Sequence:NM_177081.4Link to Protein Sequence:NP_796055.1Re-query CCDS DB by Nucleotide ID:NM_177081Re-query CCDS DB by Protein ID:NP_796055Link to BLAST:NP_796055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343311.1 359 Q8BUM3 359 100% 0 0
NP_796055.1 359 Q8BUM3 359 100% 0 0

Chromosomal Locations for CCDS 15315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135133802 135133923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135134440 135134623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135134831 135134915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135136099 135136175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135137324 135137461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135137768 135137878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135139124 135139278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135141943 135142056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135143161 135143254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGTCCAGGCCTGTGAGGGGCGCTCCAGAGCACAGCTGCCGACCTTGTCTTTGGGGGCAGACATGACTC
AGCCTCCACCCACCAAAGCTCCAGCCAAGAAGCATGTGCGGCTGCAGGAGAGAAGGGGCTCCAGTGTGGC
TCTGATGCTGGATGTACAGTCTCTGGGCACGGTTGAACCCATCTGCTCAGTGAACACACCCCGGGAAGTC
ACCCTACACTTCCTGCGCACGGCTGGACACCCCCTTACACGCTGGACGCTACAGCACCAACCTCCCAGCC
CCAAGCAGCTAGAGGAGGAATTCTTGAAGATTCCCTCAAACTTTGTCAACCCTGAAGACCTGGATATCCC
TGGCCACGCCTCCAAAGACCGCTACAAGACCATCTTGCCAAATCCCCAGAGCCGTGTCTGTCTTGGCCGG
GCACAGAGCCAGGAGGACAGTGACTACATCAATGCCAACTACATCCGGGGCTATGACGGGAAGGAGAAGG
TCTACATTGCCACCCAGGGCCCCATGCCCAACACTGTAGCAGACTTCTGGGAGATGGTGTGGCAAGAAGA
CGTATCCCTCATTGTCATGCTCACCCAGCTCCGAGAGGGCAAGGAGAAATGTGTACACTACTGGCCCACA
GAAGAGGAAGCCTATGGGCCCTTCCAGATCCGCATCCAGGACATGAAAGAGCACCCAGAATACACTGTGA
GGCAACTCACCATCCAGCACCAACAGGAATGCCGTTCAGTGAAGCACATCCTCTTCTCAGCCTGGCCAGA
CCACCAGACTCCAGAATCAGCGGGGCCCCTGCTGCGCCTGGTGGCCGAGGTGGAGACTCCAGAGACAGCT
GCCAACTCCGGGCCTATAGTGGTTCACTGCAGTGCAGGGATCGGCCGGACCGGCTGCTTCATCGCCACCC
GCATCGGCTGCCAGCAGCTGAAGGCCCGAGGGGAGGTGGATATTCTGGGCATCGTGTGCCAACTTCGACT
AGACAGAGGAGGCATGATCCAGACGGCCGAGCAGTACCAGTTTCTGCACCACACTTTGGCCCTATATGCA
GCCCAGCTGCCCCCGGAGCCCAACCCCTGA

Translation (359 aa):
MVQACEGRSRAQLPTLSLGADMTQPPPTKAPAKKHVRLQERRGSSVALMLDVQSLGTVEPICSVNTPREV
TLHFLRTAGHPLTRWTLQHQPPSPKQLEEEFLKIPSNFVNPEDLDIPGHASKDRYKTILPNPQSRVCLGR
AQSQEDSDYINANYIRGYDGKEKVYIATQGPMPNTVADFWEMVWQEDVSLIVMLTQLREGKEKCVHYWPT
EEEAYGPFQIRIQDMKEHPEYTVRQLTIQHQQECRSVKHILFSAWPDHQTPESAGPLLRLVAEVETPETA
ANSGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLALYA
AQLPPEPNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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