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Report for CCDS51429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51429.1 Public Mus musculus 5 Fbxl13 23 108 98 CCDS HistoryNCBI Gene:320118Re-query CCDS DB by CCDS ID:51429.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051358.10 ENSMUSP00000052716.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051358.10Link to Ensembl Protein Viewer:ENSMUSP00000052716.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051358Re-query CCDS DB by Protein ID:ENSMUSP00000052716
Original member Current member NCBI NM_177076.4 NP_796050.2 Accepted alive Link to Nucleotide Sequence:NM_177076.4Link to Protein Sequence:NP_796050.2Re-query CCDS DB by Nucleotide ID:NM_177076Re-query CCDS DB by Protein ID:NP_796050Link to BLAST:NP_796050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796050.2 790 Q8CDU4-1 790 100% 0 0

Chromosomal Locations for CCDS 51429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21483936 21484137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21486213 21486376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21490386 21490520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21500480 21500563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21522110 21522236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21523047 21523166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21523549 21523711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21523800 21523917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21543660 21543789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21552093 21552193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21556807 21556859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21581962 21582091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21585198 21585293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21614650 21614796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21617188 21617297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21620610 21620764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21621449 21621516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21632203 21632293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21632759 21632862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21645462 21645536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGCTTCACTACGCAGTGCCACCCCCAGGCTAAGGAGCTACTTCAGGGACAAGTACATTCCTCAAATCT
GTGAGGCGCTGTTATGTGGTTTACTTGTGACATGTCCTGAGGACCCACTGAAATATTTAGAGCACATGAT
CCTAGCTATCATTAAAAGAGGTCTGGAAAACCTTCTTTGGGACACGTGCATCCATCCATCACTGAAGTCA
AGAGTTCGAAGACTGTCTGAAACTTACTTGGATGAACTTTTTGGACTGGATGACCAGCTGGTGACTCCAG
AGTTGATGATAAAAGCATGCACATTTTACACTGGACATTTAGTAAAGACACATTTCAGTGGTTGGAAAAA
AGTTGCAATACCTCGTGCAAATCAAGAGGAGATCATGGCTGAAAAAATGGACAAGGCAATAGCACATGAC
AATTTTAGATGCCAAAAATACATTTTTAATCGCTGGTTCGCCTACACGGTTATGAGTAGAGAAAGACTTA
TAACTACACTGCTTCGGTTGCGACATTTGTTCTATATGCAAAGACAAAGAATTATACTAGCAAAATGGAA
GGAGAGAGCCAGACACAAGAGTAAAACAAGAGAAGACGACTTGATTTCAAAACATGAACTTCAGTTGAAA
AAATGGAAGTTCAAGTTAGGGAAGCCGATTAGCCTTGAGGGGAGCCTCTCTGACATCGCTGTTGAGAACA
GGCGCATAGCATTTGACATTTCAGTGCTACCGGAGCAAGCAATACTCCAGATTTTCTTGTACCTCACCTT
TAAAGACATGATGGCGTGCAGTCGAGTCAACCGCTCCTGGATGGCGATGATTCAGAGAGGCTCCTTGTGG
AACTCTATTGATTTTTCCACAGTTAAAAACATTGCAGATAAATGTGTGGTGACCACTTTACAAAAGTGGC
GGCTAAACGTGCTGCGTTTAAACTTCCGAGGCTGCGACTTCCGAACAAAAACCTTGAAAGCTGTCAGCCA
CTGTAAAAACTTGCAAGAGTTGAACGTCTCTGACTGCCAGTCTTTCACAGATGAATCCATGAGGCACATT
TCTGAGGGCTGTCCTGGGGTCCTGTATCTCAATCTATCCAACACAACCATCACCAACAGGACCATGCGAC
TCCTACCCAGGTACTTCCACAACTTACAGAACCTCAGTCTGGCTTACTGCCGAAAGTTCACCGACAAAGG
CTTACAGTACCTGAACTTGGGGAACGGATGCCACAAGCTCATCTATCTGGACCTTTCCGGCTGCACCCAG
GTTTTGGTTGAGAAGTGTCCCCGTATTTCGTCGGTGGTTTTAATTGGTTCACCACACATCTCTGACTCTG
CTTTCAAAGCTCTTTCCTCCTGCGACCTCAAAAAGATTCGATTTGAAGGAAACAAAAGGATTTCTGATGC
GTGCTTTAAGTCGATAGACAGGAATTATCCAGGCATCAATCACATTTACATGGTGGACTGCAAAGGGCTA
ACAGACAGCAGCCTCAAGTCACTTTCACTTTTGAAGCAATTGACAGTGTTGAACTTGACAAATTGCATAA
GGATTGGTGATATCGGCCTGAAGCATTTTTTTGATGGTCCTGCGAGTATCAGGCTAAGAGAGCTCAATTT
GACTAACTGCTCACTGCTGGGCGATTCCTCTGTCATCAGACTGTCAGAGCGTTGCCCTAATTTACACTAC
TTGAATTTACGAAATTGTGAACATCTGACTGACTTGGCAATTGAATATATTGCAAGCATGTTATCCTTGA
TATCAGTAGATCTTTCTGGAACACTCATCTCAAATGAGGGCATGACCATACTTTCCAGACACAGAAAACT
GAGGGAAGTTTCTGTGTCTGACTGTGTCAACATCACTGACTTTGGAATTCGGGCATACTGCAAAACCTCG
CTGTTGTTGGAACACTTGGACGTCTCCTACTGCTCCCAACTGACAGATGACATCATAAAGACTATAGCCA
TTTTCTGTACTCGAATTACATCTCTTAACATCGCTGGATGCCCAAAGATTACCGATGCAGGGATGGAGAT
ATTATCTGCAAGGTGCCATTATCTGCACATTTTGGATATCTCTGGCTGTATCCAACTTACAGACCAGATC
ATTCAGGACCTTCAAATAGGCTGCAAACAACTCCGGATCCTCAAGATGCAATTCTGCAAGTCCATCTCTC
CGGCAGCGGCTCAGAAAATGTCCTCTGTGGTCCAGCATCAGGAATACAACTCCGACAACCCTCCACATTG
GTTTGGCTACGACTCTGAAGGCAACCCTCTTGACAAGATTCATAGTCGAGTACAACTTAGAACTTACTCA
AAACTGATAGTCAAAGAGCCATTCAGCATCGACGAGGAGGATCCAGACTCCAAACACCAATAG

Translation (790 aa):
MASLRSATPRLRSYFRDKYIPQICEALLCGLLVTCPEDPLKYLEHMILAIIKRGLENLLWDTCIHPSLKS
RVRRLSETYLDELFGLDDQLVTPELMIKACTFYTGHLVKTHFSGWKKVAIPRANQEEIMAEKMDKAIAHD
NFRCQKYIFNRWFAYTVMSRERLITTLLRLRHLFYMQRQRIILAKWKERARHKSKTREDDLISKHELQLK
KWKFKLGKPISLEGSLSDIAVENRRIAFDISVLPEQAILQIFLYLTFKDMMACSRVNRSWMAMIQRGSLW
NSIDFSTVKNIADKCVVTTLQKWRLNVLRLNFRGCDFRTKTLKAVSHCKNLQELNVSDCQSFTDESMRHI
SEGCPGVLYLNLSNTTITNRTMRLLPRYFHNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQ
VLVEKCPRISSVVLIGSPHISDSAFKALSSCDLKKIRFEGNKRISDACFKSIDRNYPGINHIYMVDCKGL
TDSSLKSLSLLKQLTVLNLTNCIRIGDIGLKHFFDGPASIRLRELNLTNCSLLGDSSVIRLSERCPNLHY
LNLRNCEHLTDLAIEYIASMLSLISVDLSGTLISNEGMTILSRHRKLREVSVSDCVNITDFGIRAYCKTS
LLLEHLDVSYCSQLTDDIIKTIAIFCTRITSLNIAGCPKITDAGMEILSARCHYLHILDISGCIQLTDQI
IQDLQIGCKQLRILKMQFCKSISPAAAQKMSSVVQHQEYNSDNPPHWFGYDSEGNPLDKIHSRVQLRTYS
KLIVKEPFSIDEEDPDSKHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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