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Report for CCDS49188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49188.1 Public Mus musculus 12 A530016L24Rik 23 108 98 CCDS HistoryNCBI Gene:319942Re-query CCDS DB by CCDS ID:49188.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057465.6 ENSMUSP00000056220.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057465.6Link to Ensembl Protein Viewer:ENSMUSP00000056220.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057465Re-query CCDS DB by Protein ID:ENSMUSP00000056220
Original member Current member NCBI NM_177039.4 NP_796013.1 Accepted alive Link to Nucleotide Sequence:NM_177039.4Link to Protein Sequence:NP_796013.1Re-query CCDS DB by Nucleotide ID:NM_177039Re-query CCDS DB by Protein ID:NP_796013Link to BLAST:NP_796013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796013.1 165 Q8BNX7 165 96.9697% 0 5

Chromosomal Locations for CCDS 49188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112495004 112495114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112496855 112496984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112497333 112497368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112497843 112498063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAGGTCTGCAGCTCGAGTCTCTCGCTCTAATTCCCACCCGCGGACATGCCATCCAACCAGAGAGAATG
AGGGGACCACGCGGGGCTCACAGCCTTCCAGGACTGAGAGGGATGGTAACAGGAAGTGTCCTCCCTCTAT
CCTGAGACCCAGACGGCAAGAATGTGGATGCCACGGGGGTGAACCACAGAAAACTTCAAGGCATGTGCGG
TTCCGAGAGCCCCTGGAGGTGGCTGTCCACTACATTGCCCGCAAGGACACGACAGCCGCCATCAAGGTCC
CCAGCCGGCCAGCTTCCCATGGTGGCTCTCCACTCCAGCCAGCATCCCGCAGCGGCTCCCTATTCCTGTG
GCTGACACTGTGTGCTCTGCTTGGAGTGGTACTGGTCCTGTACTGTGGCCAGGCCAAACGTGTCACAGCA
GCCCTGGAGGACCTCTTGGCTCAGCTCCTCGCCCTAATCTTGCGCCTGTGGTGTGTGGTCCTTGCTTGTT
GGCACTGA

Translation (165 aa):
MRSAARVSRSNSHPRTCHPTRENEGTTRGSQPSRTERDGNRKCPPSILRPRRQECGCHGGEPQKTSRHVR
FREPLEVAVHYIARKDTTAAIKVPSRPASHGGSPLQPASRSGSLFLWLTLCALLGVVLVLYCGQAKRVTA
ALEDLLAQLLALILRLWCVVLACWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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