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Report for CCDS29609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29609.1 Public Mus musculus 19 Cblif 23 108 98 CCDS HistoryNCBI Gene:14603Re-query CCDS DB by CCDS ID:29609.1Re-query CCDS DB by GeneID:14603See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025585.3 ENSMUSP00000025585.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025585.3Link to Ensembl Protein Viewer:ENSMUSP00000025585.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025585Re-query CCDS DB by Protein ID:ENSMUSP00000025585
Original member Current member NCBI NM_008118.3 NP_032144.2 Accepted alive Link to Nucleotide Sequence:NM_008118.3Link to Protein Sequence:NP_032144.2Re-query CCDS DB by Nucleotide ID:NM_008118Re-query CCDS DB by Protein ID:NP_032144Link to BLAST:NP_032144.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032144.2 417 P52787 417 100% 0 0

Chromosomal Locations for CCDS 29609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11747647 11747725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11748427 11748603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11749685 11749798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11750184 11750324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11752190 11752371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11757711 11757888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11758938 11759139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11760300 11760418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11763196 11763257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCTTGGCTTACCCTCTACCTCCTAAGTGTTCTCTGGGCTGTGGCAGGAACCAGCACCCGTGCCCAGA
GCTCTTGCTCTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGT
GACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAG
GCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGACCTGACAAGTGGGCAGCTTGCCC
TCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAAT
GGAGAACTGGTCACCTTCAAGCCCGGGTGCTGAATCCTCGGCCTTCTATGGGCCTGGTTTGGCGATCCTC
GCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGG
AACCCTCTCCCTTCAATGTGGACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGAT
TCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATC
AGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGGCTCTCT
CCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGAT
TAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTAC
CTAGATGTGCCCCAAGTAACATGTGGTCCTGATCATGAAGTGCCACCAACTTTAACTGACTATCCTACCC
CGGTCCCCACTTCAGTATCTAACATTACCGTCATATATACCATAAACAACCAGCTGAGAGGGGTTGATCT
GCTTTTCAATGTGACCATCGAGGTTAGTGTGAAAAGTGGATCTGTGCTACTTGCTGTCCTAGAAGAAGCA
CAGCGCAAAAACTCCATGTTCAAATTTGAAACCACCATGACATCCTGGGGCCTTATTGTCTCTTCTATCA
ATAATATCGCTGAGAATGTTAATCACAAGACATACTGGGAGTTTCTTAGTGGCAAAACGCCTTTGGATGA
AGGGGTTGCTTACTATATCCCCTTCAATCATGAGCACATCACAGCCAACTTCACCCAATACTGA

Translation (417 aa):
MAWLTLYLLSVLWAVAGTSTRAQSSCSVPPDQQPWVDGLQALMENSVTDSDFPNPSILIAMNLAGAYNVE
AQKLLTYQLMASDSADLTSGQLALTVMALTSSCRDPGSKVSTLLKKMENWSPSSPGAESSAFYGPGLAIL
ALCQKSSEATLPIAVRFAKTLMMEPSPFNVDTGAVATLALTCMYNKIPVGSQENYRDLFGQALKAIVEKI
SLRIKADGIIGDIYSTGLAMQALSVTPEQPTKKWDCEKTMHTILNEIKQGKFQNPMSIAQILPSLKGKTY
LDVPQVTCGPDHEVPPTLTDYPTPVPTSVSNITVIYTINNQLRGVDLLFNVTIEVSVKSGSVLLAVLEEA
QRKNSMFKFETTMTSWGLIVSSINNIAENVNHKTYWEFLSGKTPLDEGVAYYIPFNHEHITANFTQY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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