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Report for CCDS22548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22548.1 Public Mus musculus 8 Cx3cl1 23 108 98 CCDS HistoryNCBI Gene:20312Re-query CCDS DB by CCDS ID:22548.1Re-query CCDS DB by GeneID:20312See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034230.6 ENSMUSP00000034230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034230.6Link to Ensembl Protein Viewer:ENSMUSP00000034230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034230Re-query CCDS DB by Protein ID:ENSMUSP00000034230
Original member Current member NCBI NM_009142.3 NP_033168.2 Accepted alive Link to Nucleotide Sequence:NM_009142.3Link to Protein Sequence:NP_033168.2Re-query CCDS DB by Nucleotide ID:NM_009142Re-query CCDS DB by Protein ID:NP_033168Link to BLAST:NP_033168.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033168.2 395 O35188 395 100% 0 0

Chromosomal Locations for CCDS 22548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94772265 94772334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94778028 94778148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94779560 94780556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGCTCCCTCGCCGCTCGCGTGGCTGCTGCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCTGCCGG
GTCAGCACCTCGGCATGACGAAATGCGAAATCATGTGCGACAAGATGACCTCACGAATCCCAGTGGCTTT
GCTCATCCGCTATCAGCTAAACCAGGAGTCCTGCGGCAAGCGTGCCATTGTCCTGGAGACGACACAGCAC
AGACGCTTCTGTGCTGACCCGAAGGAGAAATGGGTCCAAGACGCCATGAAGCATCTGGATCACCAGGCTG
CTGCCCTCACTAAAAATGGTGGCAAGTTTGAGAAGCGGGTGGACAATGTGACACCTGGGATCACCTTGGC
CACTAGGGGACTGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCACATTGGAAGACCTTGCTTTGGAA
CTGACTACTATTTCCCAGGAGGCCAGGGGGACCATGGGGACTTCCCAAGAGCCACCGGCAGCAGTGACCG
GATCATCTCTCTCAACTTCCGAGGCACAGGATGCAGGGCTTACGGCTAAGCCTCAGAGCATTGGAAGTTT
TGAGGCGGCTGACATCTCCACCACCGTTTGGCCGAGTCCTGCTGTCTACCAATCTGGATCTAGCTCCTGG
GCTGAGGAAAAAGCTACTGAGTCCCCCTCCACTACAGCCCCATCTCCTCAGGTGTCCACTACTTCACCTT
CAACCCCAGAGGAAAATGTTGGGTCCGAAGGCCAACCCCCATGGGTCCAGGGACAGGACCTCAGTCCAGA
GAAGTCTCTAGGGTCTGAGGAGATAAACCCAGTTCATACTGATAATTTCCAGGAGAGGGGGCCTGGCAAC
ACAGTCCACCCCTCAGTGGCTCCCATCTCCTCTGAAGAGACCCCCAGCCCAGAGCTGGTGGCCTCGGGCA
GCCAGGCTCCTAAGATAGAGGAACCCATCCATGCCACTGCAGATCCCCAGAAACTGAGTGTGCTTATCAC
TCCTGTCCCCGACACCCAGGCAGCCACAAGGAGGCAGGCAGTGGGGCTACTGGCTTTCCTTGGTCTTCTT
TTCTGCCTAGGGGTGGCCATGTTTGCTTACCAGAGCCTTCAGGGCTGTCCCCGCAAAATGGCGGGGGAAA
TGGTAGAAGGCCTCCGCTACGTCCCCCGTAGCTGTGGCAGTAACTCATACGTCCTGGTGCCAGTGTGA

Translation (395 aa):
MAPSPLAWLLRLAAFFHLCTLLPGQHLGMTKCEIMCDKMTSRIPVALLIRYQLNQESCGKRAIVLETTQH
RRFCADPKEKWVQDAMKHLDHQAAALTKNGGKFEKRVDNVTPGITLATRGLSPSALTKPESATLEDLALE
LTTISQEARGTMGTSQEPPAAVTGSSLSTSEAQDAGLTAKPQSIGSFEAADISTTVWPSPAVYQSGSSSW
AEEKATESPSTTAPSPQVSTTSPSTPEENVGSEGQPPWVQGQDLSPEKSLGSEEINPVHTDNFQERGPGN
TVHPSVAPISSEETPSPELVASGSQAPKIEEPIHATADPQKLSVLITPVPDTQAATRRQAVGLLAFLGLL
FCLGVAMFAYQSLQGCPRKMAGEMVEGLRYVPRSCGSNSYVLVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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