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Report for CCDS29584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29584.1 Public Mus musculus 19 Pga5 23 108 98 CCDS HistoryNCBI Gene:58803Re-query CCDS DB by CCDS ID:29584.1Re-query CCDS DB by GeneID:58803See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025647.6 ENSMUSP00000025647.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025647.6Link to Ensembl Protein Viewer:ENSMUSP00000025647.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025647Re-query CCDS DB by Protein ID:ENSMUSP00000025647
Original member Current member NCBI NM_021453.4 NP_067428.2 Accepted alive Link to Nucleotide Sequence:NM_021453.4Link to Protein Sequence:NP_067428.2Re-query CCDS DB by Nucleotide ID:NM_021453Re-query CCDS DB by Protein ID:NP_067428Link to BLAST:NP_067428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067428.2 387 Q9D106 387 100% 0 0

Chromosomal Locations for CCDS 29584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10669109 10669261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10669355 10669453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10669528 10669672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10671788 10671904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10673638 10673837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10674827 10674945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10675044 10675161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10676625 10676784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10677919 10677971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGAAGTGGCTCTGGGTCCTTGGGCTTGTGGCCCTCTCAGAGTGCTTGGTCAAAATCCCTCTGATGAAGA
TTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAG
CCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTA
GACCTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTG
GATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCGCTCACCACAAAGCCTTCAA
CCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATG
TCCGGATTTCTTGCCTATGACACTGTCAGGATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGA
GCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAA
CCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTC
TTTGCCTTCTACTTGAGCAGCAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCT
ACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAGCAT
CTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTG
CTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCG
AGTACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTA
CCCAGTGCCAGCCAGTGCCTACATCCGAAAGGATCGGTCACACAATTGCAGGAGCAACTTTGAGGAGGGC
ATGGATGACCCATCAGACCCTGAGATGTGGGTGCTGGGGGATGTCTTCCTGAGGCTGTATTTCACCGTGT
TTGATCGGGCAAATAACAGGATTGGTCTGGCTCCTGCTGCATGA

Translation (387 aa):
MKWLWVLGLVALSECLVKIPLMKIKSMRENLRESQVLKDYLEKYPRSRAHVLLEQRRNPAVTYEPMRNYL
DLVYIGIISIGTPPQEFRVVLDTGSSVLWVPSIYCSSPACAHHKAFNPLRSSTFLVSGRPVNVAYGSGEM
SGFLAYDTVRIGDLTVVAQAFGLSLEEPGIFMEYAVFDGILGLGYPNLGLQGITPVFDNLWLQGLIPQNL
FAFYLSSKDEKGSMLMLGGVDPSYYHGELHWVPVSKPSYWQLAVDSISMNGEVIACDGGCQGIMDTGTSL
LTGPRSSIVNIQNLIGAKASGDGEYFLKCDTINTLPDIVFTIGSVTYPVPASAYIRKDRSHNCRSNFEEG
MDDPSDPEMWVLGDVFLRLYFTVFDRANNRIGLAPAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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