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Report for CCDS29689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29689.1 Public Mus musculus 19 Carnmt1 23 108 98 CCDS HistoryNCBI Gene:67383Re-query CCDS DB by CCDS ID:29689.1Re-query CCDS DB by GeneID:67383See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025632.10 ENSMUSP00000025632.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025632.10Link to Ensembl Protein Viewer:ENSMUSP00000025632.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025632Re-query CCDS DB by Protein ID:ENSMUSP00000025632
Original member NCBI NM_026120.4 NP_080396.2 Updated not alive Link to Nucleotide Sequence:NM_026120.4Link to Protein Sequence:NP_080396.2Re-query CCDS DB by Nucleotide ID:NM_026120Re-query CCDS DB by Protein ID:NP_080396
Current member NCBI NM_026120.5 NP_080396.2 Accepted alive Link to Nucleotide Sequence:NM_026120.5Link to Protein Sequence:NP_080396.2Re-query CCDS DB by Nucleotide ID:NM_026120Re-query CCDS DB by Protein ID:NP_080396Link to BLAST:NP_080396.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080396.2 400 Q80UY1 400 100% 0 0

Chromosomal Locations for CCDS 29689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18671000 18671202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18677688 18677883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18679104 18679267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18690230 18690370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18691417 18691595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18693649 18693762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18703361 18703464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18704020 18704121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGCAGCGACGACAGCGCGCTCCGCCCGCGTCTCAACCGGCCCAGGACGGCGGGCGAAGCGAGGACGTGG
AGGTGCAGTTCTCCGCCGGGCGTTTGGGCTCGGCCGCGCCTGCGGGGCCCCCGGCGCGCGGCACCGCCGA
GGACGAGGAGCGGCTGGAGCGCGAGCACTTCTGGAAGGTCATCAACGCGTTCCGCTACTACGGCACCAGC
ATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTC
CTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCAT
TGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGATGCCAATGGAAAGATTATGCCA
GCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCG
GGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAG
ATGGGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCT
ATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCA
ACAGATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATC
AGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTT
TCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCAATGCCTGGGACTGTATTGCCACCTGCT
TCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGG
AATCTGGATAAATCTTGGTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTG
AGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAGGTGGAGAAAGAATCTGTAT
TGTCAACATATACTGTGAATGATCTCTCTATGATGAAATACTACTATGAGTGTGTTTTGTTTGTGGTCCG
GAAGCCACAATAA

Translation (400 aa):
MQRRQRAPPASQPAQDGGRSEDVEVQFSAGRLGSAAPAGPPARGTAEDEERLEREHFWKVINAFRYYGTS
MHERVNRTERQFRSLPENQQKLLPQFPLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGEDANGKIMP
ASTFDMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAWEVA
MLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPILFPDVDPHSLPPGSNF
SMTAGDFQEIYSECNAWDCIATCFFIDTAHNVIDYIDTIWRILKPGGIWINLGPLLYHFENLANELSIEL
SYEDIKNVVLQYGFQLEVEKESVLSTYTVNDLSMMKYYYECVLFVVRKPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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