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Report for CCDS25834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25834.1 Public Mus musculus 12 Cpsf3 23 108 98 CCDS HistoryNCBI Gene:54451Re-query CCDS DB by CCDS ID:25834.1Re-query CCDS DB by GeneID:54451See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067284.9 ENSMUSP00000068148.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067284.9Link to Ensembl Protein Viewer:ENSMUSP00000068148.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000067284Re-query CCDS DB by Protein ID:ENSMUSP00000068148
Original member Current member NCBI NM_018813.3 NP_061283.2 Accepted alive Link to Nucleotide Sequence:NM_018813.3Link to Protein Sequence:NP_061283.2Re-query CCDS DB by Nucleotide ID:NM_018813Re-query CCDS DB by Protein ID:NP_061283Link to BLAST:NP_061283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061283.2 684 Q9QXK7 684 100% 0 0

Chromosomal Locations for CCDS 25834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 21286495 21286544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21290248 21290311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21291751 21291848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21293226 21293354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21295030 21295207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21296647 21296736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21297789 21297939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21300042 21300217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21301416 21301574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21302359 21302505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21305303 21305455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21306773 21306881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21307993 21308091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21308904 21308998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21310197 21310284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21312298 21312367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21313767 21313863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21314648 21314749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGTCTGCGATTCCTGCAGAGGAGAGCGACCAGCTGCTGATCCGACCCCTTGGTGCTGGGCAAGAAGTGG
GAAGATCATGTATTATTCTGGAGTTCAAAGGAAGGAAAATCATGCTGGACTGTGGGATCCACCCTGGCCT
GGAAGGAATGGATGCCCTTCCTTACATTGACCTTATCGACCCAGCTGAGATCGACCTTCTGTTGATCAGT
CATTTCCATTTGGATCACTGTGGAGCCCTGCCCTGGTTCCTTCAGAAGACAAGTTTCAAAGGACGGACAT
TTATGACCCACGCCACAAAAGCTATTTATAGATGGCTTCTCTCAGACTATGTCAAAGTCAGCAACATATC
GGCAGATGACATGCTGTACACTGAGACAGACTTGGAAGAAAGCATGGACAAAATCGAAACCATCAATTTT
CATGAAGTTAAGGAAGTTGCAGGAATCAAGTTCTGGTGTTACCATGCCGGCCACGTCCTGGGAGCAGCCA
TGTTTATGATAGAGATCGCTGGTGTGAAGCTTTTGTATACAGGTGATTTCTCAAGACAAGAAGACAGACA
CCTAATGGCTGCTGAGATTCCTAATATTAAGCCAGACATCCTGATCATTGAGTCTACGTATGGGACCCAT
ATCCATGAGAAGCGTGAAGAGCGAGAAGCAAGATTCTGCAACACTGTGCACGACATTGTCAACAGAGGGG
GCAGAGGGCTCATTCCTGTCTTTGCTCTCGGAAGAGCTCAGGAGCTGCTCCTGATTCTAGATGAGTACTG
GCAGAACCACCCGGAGCTGCATGACATACCCATTTACTACGCATCGTCTCTGGCCAAGAAGTGCATGGCC
GTGTACCAGACCTACGTGAATGCCATGAACGACAAGATCCGGAAGCAGATCAACATCAACAACCCCTTTG
TTTTCAAGCACATCAGCAACCTCAAGAGCATGGATCACTTTGATGACATTGGCCCCAGTGTTGTGATGGC
CTCACCAGGCATGATTCAAAACGGCTTATCCAGAGAGCTGTTTGAAAGCTGGTGTACAGATAAGAGGAAT
GGCGTCATCATCGCGGGGTACTGTGTCGAAGGGACACTTGCCAAGCACATCATGTCTGAACCTGAAGAAA
TCACGACCATGTCTGGACAGAAGTTGCCACTGAAAATGTCGGTTGATTACATTTCTTTCTCTGCTCACAC
AGATTACCAGCAAACCAGTGAATTTATTCGTGCTCTGAAGCCACCTCACGTGATTTTAGTCCATGGGGAA
CAGAATGAAATGGCCAGGCTGAAAGCAGCGCTGATCCGAGAATATGAAGATAATGATGAAGTTCACATCG
AGGTTCACAATCCTCGGAACACAGAGGCCGTGACCTTAAACTTCAGGGGAGAGAAGCTCGCCAAGGTCAT
GGGCTTTTTGGCAGACAAGAAACCAGAACAGGGCCAGCGGGTCTCTGGAATTCTTGTTAAAAGAAACTTT
AATTACCACATACTCTCTCCCTGTGACCTCTCCAATTACACTGACCTGGCCATGAGCACTGTGAAACAGA
CCCAGGCCATCCCGTACACCGGGCCCTTTTACCTGCTCTACTACCAGCTCCAGAAATTGACGGGTGATGT
AGAAGAATTAGAAATTCAAGAAAAGCCTGCTCTGAAGGTGTTCAAAAGCATCACTGTGGTGCAGGAGCCG
GGCATGGTGGTTCTGGAGTGGCTGGCGAACCCCTCTAACGACATGTATGCAGACACAGTGACCACCGTGA
TATTGGAAGTTCAGTCAAATCCAAAGATAAGGAAAGGTGCAGTACAGAAGGTCTCTAAGAAGCTAGAGAT
GCACGTTTACAGCAAGAGGCTGGAGGTCATGCTCCAGGACATATTTGGAGAAGACTGTGTCAGTGTGAAA
GATGACTCCGTCCTCAGTGTCACAGTGGACGGGAAAACAGCAAATATTAATCTGGAGACTCGGGCTGTAG
AATGTGAAGAAGGAAGTGAAGATGATGAATCCCTCCGAGAAATGGTGGAACTGGCCGCCCAGAGACTGTA
CGAGGCTCTGACGCCGGTGCACTGA

Translation (684 aa):
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLIS
HFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINF
HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH
IHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMA
VYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRN
GVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNF
NYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEKPALKVFKSITVVQEP
GMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVK
DDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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