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Report for CCDS20563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20563.1 Public Mus musculus 6 Tigar 23 108 98 CCDS HistoryNCBI Gene:319801Re-query CCDS DB by CCDS ID:20563.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039913.8 ENSMUSP00000048643.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039913.8Link to Ensembl Protein Viewer:ENSMUSP00000048643.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039913Re-query CCDS DB by Protein ID:ENSMUSP00000048643
Original member Current member NCBI NM_177003.5 NP_795977.1 Accepted alive Link to Nucleotide Sequence:NM_177003.5Link to Protein Sequence:NP_795977.1Re-query CCDS DB by Nucleotide ID:NM_177003Re-query CCDS DB by Protein ID:NP_795977Link to BLAST:NP_795977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795977.1 269 Q8BZA9 269 100% 0 0

Chromosomal Locations for CCDS 20563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127087874 127088302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127089193 127089303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127091184 127091261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127092621 127092742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127101849 127101886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127109436 127109467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCCGCGCTTCGCCTTGACCGTTATCCGCCATGGTGAAACAAGACTTAATAAGGAGAAAATCATTCAAG
GACAAGGCGTAGATGCGCCCCTTTCGGAGACTGGGTTTCGGCAAGCAGCGGCCGCCGGGCAGTTTCTGAG
CAATGTGCAGTTTACCCACGCCTTCTCCAGCGATCTCACGAGGACTAAGCAGACCATACATGGCATTTTG
GAGAAAAGCAGATTTTGTAAAGACATGGCGGTGAAGTACGACTCCAGGCTCCGAGAAAGGATGTACGGAG
TCGCGGAAGGCAAGCCGCTAAGCGAGCTTCGGGCCATGGCCAAAGCCGCTGGGGAAGAGTGCCCCATGTT
CACCCCGCCTGGAGGAGAGACAGTTGAGCAGGTAAAGATGCGCGGAAAGGATTTCTTTGATTTCATTTGT
CAGCTAATCCTGGGCAAGGCAGGGCAGAGAGAAAGCGTCCTGCCTGGAGCGCCAGGCAGCGGTTTGGAAA
GCTCTTTGGCAGAGGTTTTCCCTGTTGGAAAACATGGCAGCTTGGGGGCGAATCCCAAAGGTGGCACCCT
GGGCTTAGCAGCCAGCATCTTAGTTGTGAGCCATGGCGCTTACATGAGAAGCCTCTTTGGTTATTTTCTG
AGTGACCTCAGATGCTCGTTGCCAGGAGCGAGAGACAAATTGGAACTTTCCTCCATCACTCCCAACACTG
GGATCAGTGTCTTCATCATAGACTGTGAGGAAGCACGCCAGCCATCGATTCAGTGCGTTTGTATGAACCT
CCAGGAGCACCTGAACGGAGTGACTGAGAAGCAGCACTGA

Translation (269 aa):
MPRFALTVIRHGETRLNKEKIIQGQGVDAPLSETGFRQAAAAGQFLSNVQFTHAFSSDLTRTKQTIHGIL
EKSRFCKDMAVKYDSRLRERMYGVAEGKPLSELRAMAKAAGEECPMFTPPGGETVEQVKMRGKDFFDFIC
QLILGKAGQRESVLPGAPGSGLESSLAEVFPVGKHGSLGANPKGGTLGLAASILVVSHGAYMRSLFGYFL
SDLRCSLPGARDKLELSSITPNTGISVFIIDCEEARQPSIQCVCMNLQEHLNGVTEKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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