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Report for CCDS26233.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26233.2 Public Mus musculus 13 Idi1 23 108 98 CCDS HistoryNCBI Gene:319554Re-query CCDS DB by CCDS ID:26233.2See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26233.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 56 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26233.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169314.8 ENSMUSP00000132780.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169314.8Link to Ensembl Protein Viewer:ENSMUSP00000132780.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169314Re-query CCDS DB by Protein ID:ENSMUSP00000132780
Original member Current member NCBI NM_145360.2 NP_663335.2 Accepted alive Link to Nucleotide Sequence:NM_145360.2Link to Protein Sequence:NP_663335.2Re-query CCDS DB by Nucleotide ID:NM_145360Re-query CCDS DB by Protein ID:NP_663335Link to BLAST:NP_663335.2

Chromosomal Locations for CCDS 26233.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 8885860 8885996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8886732 8886904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8887485 8887577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8887923 8888053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8890318 8890635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTGGCGCGGACGGACACTGGCGCGAGCGATTGGATATGCTGTTAGAGGGCGGGGCCTGGAGGCGGAGC
ATGCTGCGGAGAGGATTGAAGTACAGCTCTCCGCACAGCTTCTCAGCACCTGCAGCCGGAATCTCTGTGT
TCTAGGTCAGATCAGACATTCTGTCACAATGCCTGAAATAAATACCAGCCATCTTGATGAAAAACAGGTT
CAGCTTCTAGCGGAGATGTGTATTCTTATTGATGAAAATGACAATAAAATTGGGGCTGACACCAAGAAAA
ACTGTCACCTTAATGAAAACATCGACAAAGGATTATTACATCGAGCTTTTAGTGTCTTCTTGTTTAATAC
TGAAAATAAGCTCCTGTTACAGCAGAGATCAGATGCTAAAATTACCTTTCCAGGTTGTTTCACCAATAGT
TGCTGTAGTCATCCATTAAGTAACCCAGGCGAGCTGGAAGAGAACAACGCCATTGGTGTGAAGCGAGCAG
CAAAGCGGCGCTTGAAAGCCGAGTTGGGAATACCCTTGGAAGAGGTTGATCTAAATGAAATGGATTATCT
AACAAGAATTTACTACAAGGCCCAATCTGATGGTATCTGGGGTGAACATGAAGTTGATTACATTCTGTTT
CTGAGGAAGAATGTAACCTTGAATCCAGATCCCAACGAGATTAAAAGCTATTGCTATGTATCAAAGGAAG
AAGTCAGAGAAATTTTGAAGAAGGCAGCCAGTGGTGAAATTAAGTTAACTCCGTGGTTTAAGATAATTGC
AGATACTTTCCTCTTCAAATGGTGGGATAACTTAAACCATTTGAGTCCATTTGTTGACCATGAGAAAATA
CATAGATTGTGA

Translation (283 aa):
MWRGRTLARAIGYAVRGRGLEAEHAAERIEVQLSAQLLSTCSRNLCVLGQIRHSVTMPEINTSHLDEKQV
QLLAEMCILIDENDNKIGADTKKNCHLNENIDKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNS
CCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILF
LRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGEIKLTPWFKIIADTFLFKWWDNLNHLSPFVDHEKI
HRL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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