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Report for CCDS50711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50711.1 Public Mus musculus 2 Pced1a 23 108 98 CCDS HistoryNCBI Gene:319513Re-query CCDS DB by CCDS ID:50711.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089581.10 ENSMUSP00000087009.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089581.10Link to Ensembl Protein Viewer:ENSMUSP00000087009.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089581Re-query CCDS DB by Protein ID:ENSMUSP00000087009
Original member Current member EBI ENSMUST00000110277.1 ENSMUSP00000105906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110277.1Link to Ensembl Protein Viewer:ENSMUSP00000105906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110277Re-query CCDS DB by Protein ID:ENSMUSP00000105906
Original member NCBI NM_001114541.1 NP_001108013.1 Updated not alive Link to Nucleotide Sequence:NM_001114541.1Link to Protein Sequence:NP_001108013.1Re-query CCDS DB by Nucleotide ID:NM_001114541Re-query CCDS DB by Protein ID:NP_001108013
Current member NCBI NM_001114541.2 NP_001108013.1 Accepted alive Link to Nucleotide Sequence:NM_001114541.2Link to Protein Sequence:NP_001108013.1Re-query CCDS DB by Nucleotide ID:NM_001114541Re-query CCDS DB by Protein ID:NP_001108013Link to BLAST:NP_001108013.1
Original member NCBI NM_178762.4 NP_848877.2 Updated not alive Link to Nucleotide Sequence:NM_178762.4Link to Protein Sequence:NP_848877.2Re-query CCDS DB by Nucleotide ID:NM_178762Re-query CCDS DB by Protein ID:NP_848877
Current member NCBI NM_178762.5 NP_848877.2 Accepted alive Link to Nucleotide Sequence:NM_178762.5Link to Protein Sequence:NP_848877.2Re-query CCDS DB by Nucleotide ID:NM_178762Re-query CCDS DB by Protein ID:NP_848877Link to BLAST:NP_848877.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108013.1 449 Q6P1Z5 449 100% 0 0
NP_848877.2 449 Q6P1Z5 449 100% 0 0

Chromosomal Locations for CCDS 50711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130419086 130419333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130419630 130419890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130421890 130422136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130422225 130422375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130422466 130422704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130422813 130422892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130423412 130423535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGTCTTCTGTTTGGAAAACGAGATGCCACACCGCCTGCTGGGAAGCGCCATGGTCCACTTCCATGCCT
CAGAAGTCCAGCAGCTGCTACACAACAAGTTCGTGGTCATTTTGGGGGACTCCATCCAAAGAGCTGTGTA
TAAGGACCTGGTGCTTCTGCTCCAGAAAGACACACTGCTCACAGCTTCCCAGTTAAAAGCCAAGGGGGAG
CTGAGCTTTGAACAGGACCAGCTGGTGGCTGGGGGCCAGCTGGGAGAGCTGCACAACGGGACACAGTACC
GCGAGGTCCGCCAGTTCTGCTCTGGCTCTGGCCACCACCTTGTGCGCTTCTACTTCCTCACCCGAGTTTA
CTCCGAGTACCTTGAGGACATCCTGGAGGAGCTGTCATATGGACCTGCCCCTGACCTAGTGATCATCAAC
TCCTGCCTCTGGGATCTCTCCAGATATGGCCGCTGCTCAATGGAGAGCTACAGGGAGAACCTGGAACGAG
TCTTTGTACGAATGGACCAGGTTTTACCAGACTCTTGTCTGCTGGTGTGGAACTTGGCAATGCCTCTGGG
GGAACGTGTCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGTGTCTCTGCGACAGGATGTG
GTTGAGGGGAACTTCTACAGCGCTACACTAGCCGGGAAACACTGTTTCGACGTCCTAGATCTCCACTTCC
ATTTCCGGCATGCTGTCCGTCACCGTCATCGAGATGGTGTCCATTGGGACCAGCATGCACACCGCCACCT
CTCGCACTTACTTCTGGCCCACGTGGCCGATGCCTGGGGTGTGGAGCTGCCCAAACATGACCGGCTGCCA
GACCCATGGATTGAGGACTGGTCAGAGATGGATCATTCATTCCAGGGAAGCCATAAGCAGCCCCCAGACT
TCAGGGAGAAGCTGGCCTTGCCCCTGCTCCCACCTTTCCACTTGCCTCCTCCCATGTCTTTTCCTTACCC
ACTTGAGCCCTCACCACCTCCCTTGTTCCCACCCCTGCCCCAGGATACCCCCTTTTTCCAAGGCCAGCCC
TTTCCACCCTATGAATTCAAATACAATGCAATGGAGGACTTCTCAATGCCAGGATGTGGCCCTGGAATGA
ACTTTGTGCCTGGCCCCCTGCCACCATCAGTCTCTGGCCCTGTCTCCCACGGTCAACACCGGGGCCCAGT
GGTCCACCGGGGCAAGCCACGTTGTGTTCTGAACAACCCCTACCATGTACCAAGAATTGGGGGTCCATGC
AGGCATCGACTCAGACACTCAGACAGACTGATCCACACATACAAACAGGACAGGCGGGGACATGCCCATT
CGGGAACATGGCCTGGATAG

Translation (449 aa):
MVFCLENEMPHRLLGSAMVHFHASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDTLLTASQLKAKGE
LSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEYLEDILEELSYGPAPDLVIIN
SCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVWNLAMPLGERVTGGFLLPELQPLAVSLRQDV
VEGNFYSATLAGKHCFDVLDLHFHFRHAVRHRHRDGVHWDQHAHRHLSHLLLAHVADAWGVELPKHDRLP
DPWIEDWSEMDHSFQGSHKQPPDFREKLALPLLPPFHLPPPMSFPYPLEPSPPPLFPPLPQDTPFFQGQP
FPPYEFKYNAMEDFSMPGCGPGMNFVPGPLPPSVSGPVSHGQHRGPVVHRGKPRCVLNNPYHVPRIGGPC
RHRLRHSDRLIHTYKQDRRGHAHSGTWPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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