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Report for CCDS57243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57243.1 Public Mus musculus 3 H2bc18 23 108 98 CCDS HistoryNCBI Gene:319189Re-query CCDS DB by CCDS ID:57243.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177113.1 ENSMUSP00000135427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177113.1Link to Ensembl Protein Viewer:ENSMUSP00000135427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177113Re-query CCDS DB by Protein ID:ENSMUSP00000135427
Original member Current member NCBI NM_175666.3 NP_783597.2 Accepted alive Link to Nucleotide Sequence:NM_175666.3Link to Protein Sequence:NP_783597.2Re-query CCDS DB by Nucleotide ID:NM_175666Re-query CCDS DB by Protein ID:NP_783597Link to BLAST:NP_783597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783597.2 126 Q64525 126 100% 0 0

Chromosomal Locations for CCDS 57243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96269752 96270132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCGGATCCAGCGAAGTCTGCTCCTGCCCCAAAGAAGGGCTCTAAGAAAGCTGTCACGAAAGTGCAGA
AGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCTGTTTACGTGTACAAGGTCCTGAA
GCAAGTGCACCCCGACACGGGCATCTCATCTAAGGCTATGGGAATCATGAATTCCTTCGTGAACGATATC
TTCGAGCGCATCGCAGGTGAGGCTTCCCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGG
AGATCCAGACAGCCGTGCGTCTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCAA
GGCCGTCACCAAGTACACCAGCTCCAAGTGA

Translation (126 aa):
MPDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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