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Report for CCDS16149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16149.1 Public Mus musculus 2 Hnrnpa3 23 108 98 CCDS HistoryNCBI Gene:229279Re-query CCDS DB by CCDS ID:16149.1Re-query CCDS DB by GeneID:229279See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090792.10 ENSMUSP00000088298.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090792.10Link to Ensembl Protein Viewer:ENSMUSP00000088298.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090792Re-query CCDS DB by Protein ID:ENSMUSP00000088298
Original member Current member EBI ENSMUST00000111964.7 ENSMUSP00000107595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111964.7Link to Ensembl Protein Viewer:ENSMUSP00000107595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111964Re-query CCDS DB by Protein ID:ENSMUSP00000107595
Original member Current member NCBI NM_146130.3 NP_666242.2 Accepted alive Link to Nucleotide Sequence:NM_146130.3Link to Protein Sequence:NP_666242.2Re-query CCDS DB by Nucleotide ID:NM_146130Re-query CCDS DB by Protein ID:NP_666242Link to BLAST:NP_666242.2
Original member Current member NCBI NM_198090.2 NP_932758.1 Accepted alive Link to Nucleotide Sequence:NM_198090.2Link to Protein Sequence:NP_932758.1Re-query CCDS DB by Nucleotide ID:NM_198090Re-query CCDS DB by Protein ID:NP_932758Link to BLAST:NP_932758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666242.2 379 Q8BG05-1 379 100% 0 0
NP_932758.1 379 Q8BG05-1 379 100% 0 0

Chromosomal Locations for CCDS 16149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75659318 75659389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661466 75661588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661671 75661817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661896 75662106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662487 75662576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662661 75662756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662845 75662925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75663571 75663714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75665028 75665150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75665234 75665286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGG
AGGGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCAC
AGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCC
CAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGT
GTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGT
AAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATAT
AACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTG
GGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCT
GGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTG
GAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTATGGTGGTGGAGGTGGTGGCAGCAG
AGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGT
CCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAGGGTGGTGGATATG
GTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGTAACTATGGTGGTGG
TGGAAACTATAATGACTTTGGAAATTATAGTGGACAGCAACAATCAAATTATGGACCCATGAAGGGGGGC
AGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTGGAT
ATGGTAGCAGAAGGTTTTAA

Translation (379 aa):
MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP
QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY
NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSA
GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGG
PGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGG
SFGGRSSGSPYGGGYGSGGGSGGYGSRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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