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Report for CCDS52518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52518.1 Public Mus musculus 8 Nek5 23 108 98 CCDS HistoryNCBI Gene:330721Re-query CCDS DB by CCDS ID:52518.1Re-query CCDS DB by GeneID:330721See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169834.1 ENSMUSP00000126705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169834.1Link to Ensembl Protein Viewer:ENSMUSP00000126705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169834Re-query CCDS DB by Protein ID:ENSMUSP00000126705
Original member Current member NCBI NM_177898.5 NP_808566.2 Accepted alive Link to Nucleotide Sequence:NM_177898.5Link to Protein Sequence:NP_808566.2Re-query CCDS DB by Nucleotide ID:NM_177898Re-query CCDS DB by Protein ID:NP_808566Link to BLAST:NP_808566.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808566.2 614 Q7TSC3-3 614 100% 0 0

Chromosomal Locations for CCDS 52518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22074086 22074094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22078456 22078573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22079087 22079195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22083330 22083464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22085458 22085583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22088802 22088928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22090480 22090548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22095208 22095294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22096729 22096845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22097457 22097523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22107681 22107763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22107840 22108040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22109895 22109949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22111162 22111248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22113630 22113700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22113776 22113859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22118742 22118839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120784 22120868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22123544 22123660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGATAACTTTCACCTGATTAAGATCATTGGGGAAGGCACCTTTGGGAAGGTGTACTTGGCTAAAGATA
AATCAGAAAGCAGTCACTGTGTCATAAAAGAAATCAGTTTGACAAAGGAAAAAGAGGCCTCAAAGAACGA
AGTGATTCTTCTGGCTAGGATGGAGCATCCCAATATCGTAACCTTCTTCAGCTCGTTTCAAGAGAACGGC
AGGCTGTTTATTGTAATGGAATACTGTGATGGAGGGGATCTCATGCAGAGGATCCAGAGGCAGCGGGGAG
TGATGTTCAGCGAAGACCAGATCCTGTGTTGGTTTGTACAGATTTCTCTAGGACTGAAGCATATTCATGA
CAGGAAGATTTTACACAGGGACATAAAATCTCAGAATATTTTTCTTAGCAAGAATGGAATGGTTGCCAAG
CTCGGGGACTTTGGAACAGCAAGAACACTGAATGACTCCATGGAACTTGCTCAAACATGTGCTGGGACAC
CTTACTACCTGTCCCCAGAGATCTGTCAGAACAGGCCATACAACAATAAAACGGACATCTGGTCTCTTGG
CTGTGTCTTATATGAGCTCTGCACACTCAAGCATCCTTTTGAGAGCAACAACTTCCACCATCTGGTTCTG
AAGATTTGTCAAGGACGTGTTGCTCCCATATCACCCCACTTCTCTCGTGACCTACAGTCCTTGATACCTC
AGCTCTTCAGAGTGTCTCCTCAGGACCGGCCATCCGTTACGTCCCTTTTGAAAAGACCCTTTTTAGAAAC
TCTCATTGCCCGATCCTTGTATCCTGAGGTCTGTTCAAGAAGAATCCAGTCCCACGCTCACATGGAGAAC
ATGGCCATTGGCCCCACAGCTTGTTGGAGAGTTAGTCCATGGTCTGCTGCCTACCTTCAGAGGAAATTTG
AAGCTCAGCAATATAAGTTAAAAGTGGAAAGACAATTGGGTCTTCGTCCATCTTCTGTGGAACCACATCC
AAACGAGGGAGAAAAGCTACAAAGTCATTGGGAGGAGACTAAATTCCAGGAGCTTCAATACAGGAAGAAC
AAAATGAAGGACCAGGAATATTGGAAACAGCTGGAAGAAATCCGCCAACAGTACCACAACGACATGAAGG
AAATTAAAAAGAAAATGGGGAGAGAGCTGAAGAGAGTGGTAAAGTTTGAAATCAGCCTAGACAAGTGTAT
TTCAGAGGAAGACACCGTCCAGGAGAATGAGGCAGTGGATAAACTAAATGCTACTTTAAGCTTTGAAGAT
GGCACGAAGTTTCAGGAGCACAGATGTAAGGAGGAACATGAAGACTATACAGACAGAGCCTTTGAAGAAC
TCTGTGGCCCAGAAGCAGAGGGTTTCTTTCAGGATGTCATTGCCGCAGAGAACAGGAGGCAGTGGGATGC
CGGGGCACCTCACACTCTGCTGCGAATAATGGCAATGGCAGATGTCACCTCCACCTGCCCCACCATGCCG
GATGATGGCCAAGTGATTGTGATGGAAGGCAGTGTAGAGAATGGGAAGCAGTGGTGGCTGGATGTGCCAG
GGACCCCGTGTGCTTTGGCAGCAGAGTGTGCCTGCAGTGGCTCATTGTCTGCCAGTAAAGGAGAAACCGT
AATGATCAAACCACAGCTTCCTAAAGAAGACCAGGAAAAGGTAGAAATAGCCACGGGCATCATGGTGGAT
GATGAACAGCTGGAACCAGGATCGGATGAAGATGACATGCAGGAAGGCAGGGGGATCAAGAATTCAATGC
CATCTTCAGCTACAAGCAAGATCAAGGCCAGTCCAGGCTGCATGGCATCCTGCCCCAACTCTGTCACCCC
ACCACCCCTGCAAAGGAAAATTTGA

Translation (614 aa):
MDNFHLIKIIGEGTFGKVYLAKDKSESSHCVIKEISLTKEKEASKNEVILLARMEHPNIVTFFSSFQENG
RLFIVMEYCDGGDLMQRIQRQRGVMFSEDQILCWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAK
LGDFGTARTLNDSMELAQTCAGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFESNNFHHLVL
KICQGRVAPISPHFSRDLQSLIPQLFRVSPQDRPSVTSLLKRPFLETLIARSLYPEVCSRRIQSHAHMEN
MAIGPTACWRVSPWSAAYLQRKFEAQQYKLKVERQLGLRPSSVEPHPNEGEKLQSHWEETKFQELQYRKN
KMKDQEYWKQLEEIRQQYHNDMKEIKKKMGRELKRVVKFEISLDKCISEEDTVQENEAVDKLNATLSFED
GTKFQEHRCKEEHEDYTDRAFEELCGPEAEGFFQDVIAAENRRQWDAGAPHTLLRIMAMADVTSTCPTMP
DDGQVIVMEGSVENGKQWWLDVPGTPCALAAECACSGSLSASKGETVMIKPQLPKEDQEKVEIATGIMVD
DEQLEPGSDEDDMQEGRGIKNSMPSSATSKIKASPGCMASCPNSVTPPPLQRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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