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Report for CCDS19135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19135.1 Public Mus musculus 5 Xrcc2 23 108 98 CCDS HistoryNCBI Gene:57434Re-query CCDS DB by CCDS ID:19135.1Re-query CCDS DB by GeneID:57434See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030773.11 ENSMUSP00000030773.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030773.11Link to Ensembl Protein Viewer:ENSMUSP00000030773.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030773Re-query CCDS DB by Protein ID:ENSMUSP00000030773
Original member Current member NCBI NM_020570.2 NP_065595.2 Accepted alive Link to Nucleotide Sequence:NM_020570.2Link to Protein Sequence:NP_065595.2Re-query CCDS DB by Nucleotide ID:NM_020570Re-query CCDS DB by Protein ID:NP_065595Link to BLAST:NP_065595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065595.2 278 Q9CX47 278 100% 0 0

Chromosomal Locations for CCDS 19135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 25692113 25692828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25698251 25698332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25705678 25705716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGTGTAGCGACTTTCGCAGAGCGGAATCCGGGACAGAGCTCCTTGCCCGACTTGAAGGCAGAAGCTCGT
TGAAAGAACTAGAACCCAACCTGTTTGCTGATGAAGATTCACCAGTGCACGGTGATATTTTTGAATTTCA
TGGTCCAGAAGGAACGGGGAAAACAGAAATGCTTTATCATTTAACAGCCCGATGTATACTTCCAAAATCA
GAGGGTGGACTGCAAATAGAAGTCTTATTTATTGATACAGATTACCACTTTGACATGCTACGGCTCGTGA
CAGTTCTTGAACACAGACTCTCGCAAAGCTCCGAGGAAGCCATGAAGCTGTGCCTAGCCAGGTTGTTCCT
GGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCGC
CCCTCTCTCTGCCTTCTCATTGTGGACAGCCTGTCGTCTTTTTACTGGATAGACCGAGTCAGTGGAGGAG
AGAGTGTGGCCCTGCAGGAGTCAACGCTGCAGAAGTGCTCTCAGCTCCTAGAGCGGCTTGTCACTGAGTA
CCGCTTGCTGCTTTTTGCGACAACGCAGAGTCTAATGCAGAAAGGCTCAGACTCTGCAGACGGGCCTTCT
TCCTCCAAGCACCCATGCGATGGAGACATGGGCTACAGAGCCTATCTCTGCAAGGCCTGGCAGAGGGTCG
TGAAGCACAGGGTCATCTTCTCCAGGGACGACGAGGCCAAGAGCAGCCGGTTCTCATTAGTTTCACGTCA
TTTAAAAAGTAACAGTTTAAAAAAACACAGTTTTATGGTCAGAGAAAGTGGGGTGGAGTTTTGTTGA

Translation (278 aa):
MCSDFRRAESGTELLARLEGRSSLKELEPNLFADEDSPVHGDIFEFHGPEGTGKTEMLYHLTARCILPKS
EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSSEEAMKLCLARLFLAYCSSSMQLLLTLHSLEALLCSR
PSLCLLIVDSLSSFYWIDRVSGGESVALQESTLQKCSQLLERLVTEYRLLLFATTQSLMQKGSDSADGPS
SSKHPCDGDMGYRAYLCKAWQRVVKHRVIFSRDDEAKSSRFSLVSRHLKSNSLKKHSFMVRESGVEFC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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