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Report for CCDS28627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28627.1 Public Mus musculus 17 Marchf2 23 108 98 CCDS HistoryNCBI Gene:224703Re-query CCDS DB by CCDS ID:28627.1Re-query CCDS DB by GeneID:224703See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066121.12 ENSMUSP00000065225.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066121.12Link to Ensembl Protein Viewer:ENSMUSP00000065225.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066121Re-query CCDS DB by Protein ID:ENSMUSP00000065225
Original member Current member EBI ENSMUST00000167611.7 ENSMUSP00000127601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167611.7Link to Ensembl Protein Viewer:ENSMUSP00000127601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167611Re-query CCDS DB by Protein ID:ENSMUSP00000127601
Original member Current member EBI ENSMUST00000186022.6 ENSMUSP00000139724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186022.6Link to Ensembl Protein Viewer:ENSMUSP00000139724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186022Re-query CCDS DB by Protein ID:ENSMUSP00000139724
Original member Current member NCBI NM_145486.5 NP_663461.2 Accepted alive Link to Nucleotide Sequence:NM_145486.5Link to Protein Sequence:NP_663461.2Re-query CCDS DB by Nucleotide ID:NM_145486Re-query CCDS DB by Protein ID:NP_663461Link to BLAST:NP_663461.2

Chromosomal Locations for CCDS 28627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33688096 33688242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33692019 33692153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33696037 33696246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33703013 33703208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33709745 33709920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGACGACAGGTGACTGTTGCCACCTCCCTGGCTCCCTATGTGACTGTTCGAGCAGCCCTGCCTTTTCCA
AGGTTGTAGAGGCCACAGGGCTTGGGCCACCTCAATATGTAGCACAAGTGACTTCACGGGATGGCCGGCT
GCTCTCAACTGTCATCCGGGCTTTGGATTCACAGAGTGACTGTCCCTTCTGCCGAATCTGCCACGAGGGA
GCAAATGGGGAGAACTTGCTGTCCCCATGTGGCTGCACGGGCACACTGGGAGCTGTGCACAAGAGCTGCC
TGGAGAAATGGCTGTCTTCCTCCAACACCAGCTACTGTGAGCTGTGTCACACTGAGTTTGCAGTGGAAAA
GCGGCCCCGACCTCTCACAGAGTGGCTAAAGGACCCAGGGCCGCGCACTGAGAAGCGAACACTGTGCTGT
GACATGGTGTGCTTTGTGTTCATCACACCACTGGCTGCCATCTCAGGCTGGCTTTGCCTGCGAGGGGCCC
AGGACCACCTCCGTCTGCATAGCCGGCTGGAAGCTGTAGGTCTCATTGCCCTCACCATCGCCCTCTTTAC
CATCTATGTGCTCTGGACACTGGTCTCTTTCCGATACCATTGCCAGCTGTACTCGGAATGGAGGAAGACA
AATCAGAAAGTCCGCCTGAAGATTCGGGAAGCAGATGGCTCCGAGGATCCACATCACTCCTTGCTGGCTA
CTGGACTCTTAAAAAAGCTTCAGAGATTCAGTCCATTATCATTAAGGCAAGAGCATGGCAGCATCCAGGG
AGGCATGGTGCAGGTGGAGCTGAGAGTTCTGCATCTTCGTCTAAAGGAGGCTAGTGGAAGACTGACTCCC
AGGCATCTAGGTCAAGTGCATTAA

Translation (287 aa):
MTTGDCCHLPGSLCDCSSSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDSQSDCPFCRICHEG
ANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKDPGPRTEKRTLCC
DMVCFVFITPLAAISGWLCLRGAQDHLRLHSRLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKT
NQKVRLKIREADGSEDPHHSLLATGLLKKLQRFSPLSLRQEHGSIQGGMVQVELRVLHLRLKEASGRLTP
RHLGQVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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