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Report for CCDS55859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55859.1 Public Homo sapiens 12 POC1B 24 110 108 CCDS HistoryNCBI Gene:282809Re-query CCDS DB by CCDS ID:55859.1Re-query CCDS DB by GeneID:282809See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000549035.1 ENSP00000447916.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549035.1Link to Ensembl Protein Viewer:ENSP00000447916.1Re-query CCDS DB by Nucleotide ID:ENST00000549035Re-query CCDS DB by Protein ID:ENSP00000447916
Original member Current member NCBI NM_001199777.2 NP_001186706.1 Accepted alive Link to Nucleotide Sequence:NM_001199777.2Link to Protein Sequence:NP_001186706.1Re-query CCDS DB by Nucleotide ID:NM_001199777Re-query CCDS DB by Protein ID:NP_001186706Link to BLAST:NP_001186706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186706.1 436 Q8TC44-2 436 100% 0 0

Chromosomal Locations for CCDS 55859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 89421153 89421257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89425161 89425379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89459638 89459718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89466770 89466922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89467617 89467685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89470361 89470494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89471614 89471729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89472168 89472275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89491936 89492115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89497171 89497316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCTATGGAATTTCAAGCCACATGCTAGAGCTTACAGATATGTGGGTCACAAGGATGTTGTAACCAGCG
TGCAGTTTTCTCCACATGGAAACTTATTGGCGTCTGCCTCACGAGACAGAACCGTGAGACTCTGGATTCC
TGATAAGAGAGGAAAATTCTCAGAATTTAAAGCTCATACAGCTCCAGTTCGAAGTGTAGACTTTTCAGCT
GATGGCCAGTTTCTAGCTACAGCTTCTGAAGACAAATCCATAAAAGTATGGAGCATGTATCGCCAGCGCT
TCCTGTATTCCTTGTATCGACATACACACTGGGTACGCTGTGCCAAATTTTCACCCGATGGAAGACTAAT
TGTGTCATGTAGTGAGGATAAAACTATTAAAATTTGGGATACCACAAATAAGCAATGTGTTAATAACTTC
TCAGATTCCGTTGGATTTGCAAATTTTGTGGACTTTAACCCTAGTGGTACATGCATAGCTTCAGCAGGTT
CTGATCAAACTGTGAAAGTCTGGGATGTAAGAGTGAACAAATTACTACAGCATTACCAAGTTCACAGCGG
TGGAGTTAATTGCATATCATTCCATCCTTCGGGTAACTATCTCATCACAGCTTCTTCAGATGGTACCCTT
AAGATTCTGGACCTCTTAGAAGGAAGGCTCATCTATACACTTCAAGGACATACGGGACCTGTCTTTACTG
TTTCATTTTCAAAAGGTGGAGAGCTATTTGCATCAGGAGGTGCAGACACACAGGTCTTATTATGGAGGAC
TAACTTTGATGAATTGCATTGTAAAGGTCTTACCAAAAGAAATCTCAAAAGATTACATTTTGATTCACCA
CCACATCTTCTTGATATCTACCCAAGAACACCACATCCCCATGAGGAAAAAGTTGAGACTGTAGAAATTA
ATCCAAAGCTTGAGGTAATCGATTTGCAGATCTCTACTCCCCCTGTTATGGATATCCTTTCTTTTGATTC
TACCACAACAACAGAAACCAGTGGTAGGACTCTGCCAGACAAGGGTGAAGAGGCCTGTGGATATTTCTTG
AACCCTTCCTTAATGTCACCAGAATGTTTGCCAACAACCACGAAAAAGAAAACAGAAGACATGAGTGACC
TCCCCTGTGAAAGTCAAAGGAGCATACCTCTCGCTGTGACTGATGCTTTAGAGCATATTATGGAACAACT
CAATGTTTTGACACAGACTGTTTCAATCTTGGAGCAGCGACTGACTTTGACAGAGGATAAGCTGAAAGAC
TGCCTTGAAAATCAGCAAAAGCTTTTCAGTGCTGTCCAACAGAAAAGCTGA

Translation (436 aa):
MLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSA
DGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNF
SDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTL
KILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSP
PHLLDIYPRTPHPHEEKVETVEINPKLEVIDLQISTPPVMDILSFDSTTTTETSGRTLPDKGEEACGYFL
NPSLMSPECLPTTTKKKTEDMSDLPCESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLTLTEDKLKD
CLENQQKLFSAVQQKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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