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Report for CCDS39678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39678.1 Public Mus musculus 6 Lrp6 23 108 98 CCDS HistoryNCBI Gene:16974Re-query CCDS DB by CCDS ID:39678.1Re-query CCDS DB by GeneID:16974See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032322.14 ENSMUSP00000032322.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032322.14Link to Ensembl Protein Viewer:ENSMUSP00000032322.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032322Re-query CCDS DB by Protein ID:ENSMUSP00000032322
Original member Current member NCBI NM_008514.4 NP_032540.2 Accepted alive Link to Nucleotide Sequence:NM_008514.4Link to Protein Sequence:NP_032540.2Re-query CCDS DB by Nucleotide ID:NM_008514Re-query CCDS DB by Protein ID:NP_032540Link to BLAST:NP_032540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032540.2 1613 O88572 1613 99.69% 0 5

Chromosomal Locations for CCDS 39678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134450786 134451080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134453550 134453647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134454697 134454833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134456055 134456285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134457658 134457768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134459232 134459468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134462536 134462661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134464395 134464604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134467509 134467699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134468643 134468854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134470689 134470891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134479509 134479835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134480376 134480560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134484214 134484440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134485644 134485933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134486455 134486671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134506196 134506367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134507286 134507682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134511156 134511287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134513223 134513419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134520396 134520593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134541652 134542045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134566643 134566697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4842 nt):
ATGGGGGCCGTGCTGAGGAGCCTCCTGGCCTGCAGCTTCTGCGTGCTGCTGAGAGCGGCCCCTTTGTTGC
TTTATGCAAACAGACGGGACTTGAGATTGGTTGATGCTACAAATGGCAAAGAGAATGCAACGATTGTAGT
TGGAGGCTTGGAGGATGCAGCTGCGGTGGACTTTGTGTTTGGTCATGGCTTGATATACTGGAGTGATGTC
AGCGAAGAAGCCATTAAACGAACAGAATTTAACAAAACTGAAAGTGTACAGAATGTTGTTGTTTCTGGAT
TATTGTCCCCGGATGGGCTGGCATGTGATTGGCTTGGAGAAAAATTGTACTGGACAGATTCTGAAACTAA
TCGTATTGAAGTTTCTAATTTAGATGGATCTTTACGAAAAGTTTTATTTTGGCAAGAGTTGGATCAACCC
AGAGCTATTGCCTTAGATCCATCAAGTGGGTTCATGTACTGGACAGACTGGGGAGAAGTGCCAAAGATAG
AACGTGCTGGGATGGATGGCTCAAGTCGCTTCGTTATAATAAACACAGAGATTTACTGGCCAAACGGACT
GACTCTGGACTATCAGGAGCGGAAGCTTTACTGGGCCGATGCAAAACTTAATTTCATCCATAAATCAAAC
CTGGATGGAACAAACCGGCAGGCAGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCCTTGACGTTATTTG
AGGACACATTGTACTGGACTGACTGGAATACACACTCTATTTTGGCTTGCAACAAATATACTGGCGAGGG
TCTGCGTGAAATTCATTCTAACATCTTCTCTCCCATGGATATACATGCTTTCAGCCAACAGAGGCAGCCA
AATGCTACAAATCCATGTGGAATTGATAATGGTGGTTGTTCCCATTTGTGTTTGATGTCTCCAGTCAAGC
CTTTTTATCAGTGTGCTTGCCCAACTGGGGTCAAGCTGCTGGAGAATGGAAAGACCTGCAAAGATGGTGC
CACTGAACTATTGCTGTTAGCCCGACGGACAGACTTGAGGCGAATTTCTTTGGATACACCCGATTTTACT
GACATTGTTCTGCAGTTAGAAGATATCCGGCATGCCATTGCCATAGACTATGACCCTGTAGAAGGCTACA
TATACTGGACGGATGACGAAGTGAGGGCTATCCGTCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGT
GGTCACGGCCCAGATTGCTCATCCTGATGGTATTGCTGTTGACTGGGTTGCAAGGAACCTGTACTGGACA
GACACTGGCACGGATCGTATAGAAGTGACAAGGCTCAATGGGACCATGAGGAAGATCTTGATTTCAGAGG
ACTTAGAGGAGCCCCGGGCTATCGTGTTAGATCCCATGGTTGGGTACATGTATTGGACAGACTGGGGAGA
AATCCCAAAAATAGAGCGAGCTGCTCTGGACGGATCTGACCGAGTAGTTCTTGTCAACACTTCCCTTGGT
TGGCCAAACGGCTTAGCCCTGGATTATGATGAAGGCACAATATACTGGGGAGATGCCAAAACAGACAAAA
TTGAGGTTATGAATACCGATGGCACCGGGAGGCGAGTGCTGGTGGAAGACAAGATCCCTCACATATTTGG
GTTTACCTTGCTGGGTGACTATGTTTACTGGACTGACTGGCAGAGGCGGAGCATCGAGAGAGTACACAAA
CGGAGCGCAGAGAGGGAGGTCATCATAGATCAGCTGCCAGACCTCATGGGACTGAAGGCCACAAGTGTTC
ACAGAATCATTGGTTCTAACCCCTGTGCTGAGGACAATGGAGGATGTAGCCATCTTTGCCTGTACAGGCC
TCAGGGGCTTCGATGCGCCTGTCCCATTGGCTTTGAGCTCATCAGTGACATGAAGACATGCATTGTCCCC
GAGGCTTTCCTTCTGTTCTCGAGGAGAGCGGATATCAGACGCATATCTTTGGAAACAAACAACAACAATG
TGGCCATTCCTCTCACTGGTGTCAAAGAAGCCTCTGCTTTGGATTTTGATGTCACAGACAACAGGATTTA
CTGGACTGATATATCACTGAAGACTATTAGCAGAGCCTTTATGAATGGCAGTGCACTGGAACATGTGGTA
GAGTTTGGCTTAGATTATCCAGAAGGCATGGCAGTGGACTGGCTTGGGAAGAACTTATACTGGGCAGACA
CAGGAACAAATCGCATTGAGGTATCGAAGTTGGACGGACAGCACCGACAGGTTTTGGTATGGAAAGACCT
TGACAGTCCTCGAGCTCTGGCACTGGATCCTGCTGAAGGGTTTATGTATTGGACTGAGTGGGGAGGCAAG
CCTAAGATTGACAGGGCTGCTATGGATGGAAGTGAACGCACTACATTAGTTCCAAATGTAGGCCGAGCAA
ATGGTCTCACCATCGACTATGCTAAAAGGCGGCTTTACTGGACAGACCTGGACACTAACCTAATAGAATC
CTCAGATATGCTCGGACTCAACCGTGAAGTTATAGCAGATGACTTGCCTCATCCTTTTGGCTTAACTCAG
TACCAAGATTACATCTACTGGACAGACTGGAGCCGACGCAGCATTGAACGTGCCAACAAAACCAGTGGCC
AAAACCGCACCATCATCCAGGGCCATTTGGACTATGTGATGGACATCCTGGTCTTCCACTCTTCCCGGCA
GGCAGGGTGGAATGAGTGTGCCTCCAGCAACGGGCACTGCTCCCACCTCTGCTTGGCTGTGCCCGTCGGA
GGTTTTGTGTGTGGATGCCCTGCCCACTACTCCCTGAATGCTGACAACAGGACCTGCAGTGCTCCCACCA
CCTTCCTGCTCTTCAGTCAGAAGAGCGCCATCAACCGCATGGTGATTGATGAACAACAGAGCCCTGACAT
CATCCTTCCTATCCACAGCCTTCGGAACGTCCGGGCCATTGACTATGACCCTTTGGACAAGCAGCTCTAC
TGGATTGACTCTCGACAAAACTCCATACGAAAGGCACATGAAGATGGTGGCCAGGGTTTTAATGTAGTTG
CAAACTCAGTCGCAAATCAGAACCTTGAAATACAGCCCTATGATCTCAGCATTGATATTTATAGCCGTTA
CATCTACTGGACCTGTGAAGCTACCAATGTCATTGATGTGACGAGATTAGATGGACGATCAGTTGGAGTG
GTTCTAAAAGGCGAGCAAGACAGACCTCGAGCCATTGTGGTAAACCCCGAGAAAGGGTATATGTATTTTA
CCAATCTTCAGGAAAGATCTCCTAAAATTGAACGGGCTGCATTGGATGGTACAGAACGAGAGGTCCTCTT
TTTCAGTGGCTTAAGTAAACCAATTGCTTTGGCTCTTGATAGCAAGCTGGGCAAGCTCTTCTGGGCTGAC
TCAGATCTCCGGCGAATTGAAAGCAGTGATCTCTCAGGTGCCAACAGGATCGTGCTAGAAGACTCTAATA
TATTACAGCCTGTGGGCCTGACCGTGTTTGAAAACTGGCTCTATTGGATTGATAAACAGCAGCAGATGAT
TGAAAAAATTGACATGACTGGTCGAGAAGGAAGAACCAAGGTCCAGGCTCGAATTGCTCAGCTGAGTGAC
ATCCATGCAGTAAAGGAGCTGAACCTTCAGGAGTACAGACAGCACCCTTGTGCCCAGGATAATGGTGGCT
GTTCACATATCTGCCTTGTAAAAGGAGATGGTACGACAAGATGCTCCTGCCCCATGCACTTAGTTCTGCT
TCAGGATGAGCTGTCCTGTGGAGAGCCTCCAACGTGTTCTCCTCAGCAGTTTACCTGCTTCACTGGGGAC
ATTGACTGCATCCCTGTGGCTTGGCGGTGTGATGGGTTCACTGAGTGCGAAGACCACAGCGATGAACTCA
ATTGTCCCGTGTGCTCAGAGTCTCAGTTCCAGTGTGCCAGCGGGCAGTGCATTGATGGTGCCCTTCGATG
CAATGGCGATGCGAACTGCCAGGACAAATCAGATGAGAAGAACTGTGAAGTGCTTTGTTTAATTGATCAG
TTCCGCTGTGCCAATGGTCAGTGCGTTGGAAAGCACAAGAAATGTGACCACAGTGTGGACTGCAGTGACA
GATCTGACGAGCTGGACTGTTATCCAACTGAGGAGCCAGCACCACAAGCCACCAACACAGTTGGTTCTGT
TATTGGAGTAATTGTCACCATTTTTGTGTCTGGAACCATATACTTTATCTGCCAGAGGATGCTGTGTCCT
CGTATGAAGGGAGACGGGGAGACCATGACTAACGACTATGTGGTTCACAGCCCGGCGTCTGTGCCCCTTG
GTTATGTTCCTCACCCAAGCTCTCTCTCTGGATCTCTTCCAGGAATGTCTCGAGGCAAATCAATGATCAG
TTCCCTCAGTATCATGGGGGGAAGCAGTGGGCCCCCCTATGATCGAGCGCACGTCACGGGAGCCTCCTCA
AGCAGTTCTTCCAGTACCAAAGGCACTTACTTCCCTGCAATTTTGAACCCACCACCATCGCCTGCCACAG
AAAGATCCCATTATACCATGGAATTTGGTTATTCTTCCAACAGTCCTTCCACACATAGGTCCTACAGCTA
TAGGCCGTACAGCTACCGGCACTTTGCACCGCCCACCACACCCTGCAGCACTGATGTCTGTGACAGTGAC
TATGCTCCTAGCCGGAGGATGACCTCGGTGGCAACAGCCAAGGGCTACACCAGTGACGTGAACTATGACT
CAGAACCTGTGCCCCCACCGCCCACACCCCGAAGCCAGTACTTGTCAGCGGAGGAGAACTATGAAAGCTG
CCCCCCTTCCCCATACACGGAGAGGAGTTACTCCCACCACCTCTACCCGCCACCACCCTCCCCCTGCACG
GACTCCTCCTGA

Translation (1613 aa):
MGAVLRSLLACSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFGHGLIYWSDV
SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP
RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFVIINTEIYWPNGLTLDYQERKLYWADAKLNFIHKSN
LDGTNRQAVVKGSLPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGLREIHSNIFSPMDIHAFSQQRQP
NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFT
DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT
DTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG
WPNGLALDYDEGTIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHK
RSAEREVIIDQLPDLMGLKATSVHRIIGSNPCAEDNGGCSHLCLYRPQGLRCACPIGFELISDMKTCIVP
EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV
EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK
PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSDMLGLNREVIADDLPHPFGLTQ
YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQAGWNECASSNGHCSHLCLAVPVG
GFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLY
WIDSRQNSIRKAHEDGGQGFNVVANSVANQNLEIQPYDLSIDIYSRYIYWTCEATNVIDVTRLDGRSVGV
VLKGEQDRPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSKLGKLFWAD
SDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSD
IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGD
IDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQCIDGALRCNGDANCQDKSDEKNCEVLCLIDQ
FRCANGQCVGKHKKCDHSVDCSDRSDELDCYPTEEPAPQATNTVGSVIGVIVTIFVSGTIYFICQRMLCP
RMKGDGETMTNDYVVHSPASVPLGYVPHPSSLSGSLPGMSRGKSMISSLSIMGGSSGPPYDRAHVTGASS
SSSSSTKGTYFPAILNPPPSPATERSHYTMEFGYSSNSPSTHRSYSYRPYSYRHFAPPTTPCSTDVCDSD
YAPSRRMTSVATAKGYTSDVNYDSEPVPPPPTPRSQYLSAEENYESCPPSPYTERSYSHHLYPPPPSPCT
DSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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