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Report for CCDS56794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56794.1 Public Mus musculus 11 Tubd1 23 108 98 CCDS HistoryNCBI Gene:56427Re-query CCDS DB by CCDS ID:56794.1Re-query CCDS DB by GeneID:56427See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020821.9 ENSMUSP00000020821.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020821.9Link to Ensembl Protein Viewer:ENSMUSP00000020821.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020821Re-query CCDS DB by Protein ID:ENSMUSP00000020821
Original member Current member EBI ENSMUST00000108030.8 ENSMUSP00000103665.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108030.8Link to Ensembl Protein Viewer:ENSMUSP00000103665.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108030Re-query CCDS DB by Protein ID:ENSMUSP00000103665
Original member Current member NCBI NM_001199045.1 NP_001185974.1 Accepted alive Link to Nucleotide Sequence:NM_001199045.1Link to Protein Sequence:NP_001185974.1Re-query CCDS DB by Nucleotide ID:NM_001199045Re-query CCDS DB by Protein ID:NP_001185974Link to BLAST:NP_001185974.1
Original member Current member NCBI NM_001199046.1 NP_001185975.1 Accepted alive Link to Nucleotide Sequence:NM_001199046.1Link to Protein Sequence:NP_001185975.1Re-query CCDS DB by Nucleotide ID:NM_001199046Re-query CCDS DB by Protein ID:NP_001185975Link to BLAST:NP_001185975.1

Chromosomal Locations for CCDS 56794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86548831 86549002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86549324 86549471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86552788 86553004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86555073 86555304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86556695 86556787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86557725 86557889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86561236 86561376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86565685 86565868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86567037 86567145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCGATAGTGACAGTACAGCTGGGGCAGTGTGGCAACCAGATTGGCTTTGAAGTGTTTGATGCTTTAT
TTAGAGACTCACACTGTTCCCAGGGACTCTGTTCTAAGAGGGACAACGAGGCATATCAAGCTTCCTGCAG
AGAAAGATTTTTCAGAGAGGAAGAAAATGGAGTTCCAGTTGCCCGGGCTGTTCTTGTTGACATGGAACCT
AAAGTTATCAATCAAACACTATCAAAAGCTGCCCAGTCTGGCCGATGGAATTATGGTCAGCACACGAGTT
TTTGTCAGAAACAAGGATCTGGGAACAACTGGGCATACGGTTACTCTGTGCATGGACCGAAGCATGAAGA
ATCTATAATGAACTTAATCCAAACAGAGGTGGAGAAATGTGACTCTTTGAGTGGATTTTTCATCATAATG
AGTATGGCCGGGGGAACAGGATCAGGGCTGGGAGCCTTCGTTACACAGAAGCTACAAGATCAGTACTCCA
GTTCCTTGAAAATGAACCAGATTATATGGCCTTATGGAACGGGTGAGGTCATTGTGCAGAACTACAACTC
CATCTTGACTCTCTCTCACCTGTACCGGTCTTCAGATGCCCTTCTCATTCACGAGAATGACGCTGTCCAT
AAGATCTGTGCCAAACGGATGAACATCAAGCAGATCTCCTTCAGAGACTTAAATCAAGTTCTTGCCCACC
AGCTGGGGAGTGTGTTCCAGCCTACATACTCTGAGGACAGCTCATTTCACTACCGCAGAAATCCACTAGA
CTCTGGAACTGTAGGACCCCAGGCCTGCCTCATGCCACGAATTTTCGTTTGGTCGCTCTCTGCCACCAAC
CTATCTTTCTATCCCCAAACAGGAGACTTAATGGAGCATTTAGTTCCTCACCCTGAATTTAAGATGCTGG
GTGTCCGTAACATTCCTCAGATGTCTGCGGCGTCTCTGGCGTACAGCGCGTTTACCTGGGCTGGCCTCCT
CAAGCACTTAAGACAGATGCTTATTTCCAGTGCAAAAATGGAAGAAGGTATCAACTGGCAGGTGCGGCCT
CCTCTGACAGGCCTTCCACCCATTGGCAAAGCGTCTGCCCACAAGGAGCATCATTTTAACACTTCTCTTG
CTAACTTGGTGGTCCTCCGAGGGAGAGAGGTGCACAGTGCAGACGTAGAGGGATTTAAAGACCCAGCTCT
CTACACTTCCTGGTTGGAGCCTGTTGATGCTTTCAGTGTATGGAAAACCCAGCGAGCCTTTGACAAGTAT
GAGAAGTCTGCAGCCCTGGTCAGCAACAGCCAGCTCTTAGTAAAGCCACTGGATATGATTGTGGGCAAGG
CGTGGAATATGTTCTCATCCAAAGCCTTTATCCATCAGTACACAAAATTTGGAATGGAGGAGGAAGACTT
TTTGGACAGCTTTGCATTGTTGGAGCAAGTTGTTGCCAGTTATGGTAGTCTTGGACCCTAA

Translation (486 aa):
MSIVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEP
KVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIM
SMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVH
KICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRNPLDSGTVGPQACLMPRIFVWSLSATN
LSFYPQTGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFTWAGLLKHLRQMLISSAKMEEGINWQVRP
PLTGLPPIGKASAHKEHHFNTSLANLVVLRGREVHSADVEGFKDPALYTSWLEPVDAFSVWKTQRAFDKY
EKSAALVSNSQLLVKPLDMIVGKAWNMFSSKAFIHQYTKFGMEEEDFLDSFALLEQVVASYGSLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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