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Report for CCDS18202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18202.1 Public Mus musculus 4 Pakap 23 108 98 CCDS HistoryNCBI Gene:677884Re-query CCDS DB by CCDS ID:18202.1Re-query CCDS DB by GeneID:677884See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102904.9 ENSMUSP00000099968.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102904.9Link to Ensembl Protein Viewer:ENSMUSP00000099968.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102904Re-query CCDS DB by Protein ID:ENSMUSP00000099968
Original member Current member EBI ENSMUST00000102905.7 ENSMUSP00000099969.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102905.7Link to Ensembl Protein Viewer:ENSMUSP00000099969.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102905Re-query CCDS DB by Protein ID:ENSMUSP00000099969
Original member Current member NCBI NM_172868.3 NP_766456.1 Accepted alive Link to Nucleotide Sequence:NM_172868.3Link to Protein Sequence:NP_766456.1Re-query CCDS DB by Nucleotide ID:NM_172868Re-query CCDS DB by Protein ID:NP_766456Link to BLAST:NP_766456.1

Chromosomal Locations for CCDS 18202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 57568371 57568415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57638010 57638090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57647990 57648120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57688416 57688530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57689523 57689544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57709451 57710187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGCAGAGGCGGAATTGCACAAGGAGAGGCTGCAAGCCATAGCAGAAAAAAGAAAGAGGCAGACGGAAA
TAGAAGGGAAGAGACGACAGCTTGACGAACAGGTACTGCTGCTTCAGCATTCCAAGTCCAAAGTGCTTCG
GGAAAAATGGCTGCTGCAGGGTGTACCAGCGGGAACAGCGGAGGAGGAGGAAGCCAGGCGCAGGCAGTCT
GAAGAAGATGAATTCAAAGTCAAGCAGCTTGAAGATAACATTCAGAGGCTGGAGCAGGAAATACAAGCGC
TCGAAAGTGAAGAGTCCCAGATATCCGCCAAAGAGCAGATCATCCTGGAGAAACTGAAGGAGACGGAGAA
ATCCTTCAAGGACTTGCAGAAGAGTTTCTCCACTGCTGATGGAGCTATATACGCCATGGAAATTAATGTG
GAGAAAGACAAACAAACAGGAGAGACCAAGATTCTCTCTGCATCCACCATTGGCCCAGAGGGGGTCCATC
AGAGAGGAGTCAAAGTCTATGATGACGGTACCAAAGTAGTGTATGAGGTGCACTCGGGAGGCACCGTGGT
AGAAAACGGAGTCCACAAATTAAGCGCAAAGGATGTGGAAGAGTTAATTCAGAAGGCGGGACAGTCGAGC
TTCAGAAGACACATGTCAGAAAGGACTGTTGTTGCAGATGGGAGCCTGGGCCATCCCAAGGAACACATGC
TCTGCAAAGAGGCCAAGTTAGAAATGGTGCAAAAGTCCAGGAAAGATCAGTCTTCAGGAAACCCCGGGCA
GCAGGCCCAGCCCCCCATCACAGAAGAGCCAGGGGCAAACCTGGATCAACCAGTCACCATGATTTTTATG
GGCTACCAAAACATCGAGGATGAAGAGGAGACTAAAAAGGTGCTAGGCTATGACGAAACCATCAAGGCGG
AATTAGTCCTGATTGATGAAGACGATGAAAAGTCGCTAAGAGAGAAGACAGTGACGGATGTGTCCACAAT
CGACGGGAACGCAGCTGAGCTGGTGTCGGGCAGGCCCTTGTCAGACACCACAGAACCCTCGTCCCCAGAA
GGCAAGGAAGAGAGCCTGGCCACAGACCCGGCCCCAGGTACCCAAAAGAAAAAGCGCTGTCAATGCTGTG
TTGTCATGTGA

Translation (376 aa):
MAEAELHKERLQAIAEKRKRQTEIEGKRRQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEEARRRQS
EEDEFKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFSTADGAIYAMEINV
EKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVHKLSAKDVEELIQKAGQSS
FRRHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDQSSGNPGQQAQPPITEEPGANLDQPVTMIFM
GYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRPLSDTTEPSSPE
GKEESLATDPAPGTQKKKRCQCCVVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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