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Report for CCDS22946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22946.1 Public Mus musculus 9 Adamts8 23 108 98 CCDS HistoryNCBI Gene:30806Re-query CCDS DB by CCDS ID:22946.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068135.12 ENSMUSP00000069644.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068135.12Link to Ensembl Protein Viewer:ENSMUSP00000069644.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068135Re-query CCDS DB by Protein ID:ENSMUSP00000069644
Original member Current member NCBI NM_013906.3 NP_038934.2 Accepted alive Link to Nucleotide Sequence:NM_013906.3Link to Protein Sequence:NP_038934.2Re-query CCDS DB by Nucleotide ID:NM_013906Re-query CCDS DB by Protein ID:NP_038934Link to BLAST:NP_038934.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038934.2 905 P57110 905 99.116% 0 8

Chromosomal Locations for CCDS 22946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 30942837 30943601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30951266 30951505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30952595 30952730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30953356 30953523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30954467 30954771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30956496 30956679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30958914 30959086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30959202 30959377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 30961648 30962218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGCTCCGCGACCCCACCACCACCGGGTGGCCGCCCCTCCTGCTGCTGCTATTGCAGCTGCCGCCGCCGC
CACTCGTCTGCGGCGCCCCGGCGGGGCCGGGAACCGGGGCGCAGGCCTCGGAGCTAGTGGTGCCCACGCG
GTTGCCCGGCAGCGCGAGCGAGCTCGCCTTCCACCTGTCCGCCTTCGGCCAGGGCTTCGTGCTGCGCCTG
GCGCCTGACGCCAGCTTCCTGGCGCCGGAATTCAAGATCGAGCGCCTCGGGGGCTCGAGCGCGGCGGCCG
GGGGCGAGCCGGGACTGCGTGGCTGCTTCTTCTCTGGCACAGTGAATGGAGAACGGGAGTCGCTGGCGGC
GATGAGCCTGTGTCGCGGGCTGAGCGGCTCGTTCTTGCTGGCAGGCGAGGAGTTCACCATCCAGCCACAG
GGCGCTGGGGACTCCCTGGACCAGCCTCATCGCCTGCAGCGCTGGGGGCCGGGACAGCGCCGCGAAGACC
CCGGGCTCGCTGCCGCCGAAGTTTTCCCCCTCCCTCAAGGACTGGAGTGGGAGGTGGAGATGGGTAATGG
GCAGGGACAGGAGAGAAGTGACAACGAAGAGGACAGGAAGCAGGACAAGGAGGGGTTGCTCAAAGAGACA
GAAGACTCCCGCAAAGTGCCACCACCCTTCGGATCCAAAACTAGAAGCAAGAGGTTTGTGTCCGAGGCTC
GCTTCGTGGAAACACTTCTGGTGGCTGATGCGTCCATGGCTGCCTTCTATGGGACCGACCTGCAGAACCA
CATCCTCACGGTGATGTCAATGGCAGCCCGAATCTACAAGCACCCGAGCATCAGGAACTCCGTCAACCTT
GTGGTGGTGAAAGTGCTAATAGTGGAAGAGGAAGGATGGGGCCCGGAGGTGTCGGACAACGGGGGGCTCA
CACTGCGCAACTTCTGCAGCTGGCAACGGCGTTTCAACAAGCCCAGTGACCGCCACCCGGAGCACTATGA
CACTGCCATCTTGTTCACCAGACAGAACTTCTGTGGGAAGGGAGAGCAGTGTGACACCCTGGGGATGGCA
GACGTTGGCACCATCTGTGACCCCGACAAGAGCTGCTCAGTGATCAAGGATGAGGGACTGCAGGCAGCCT
ACACCCTGGCCCATGAGCTAGGGCACGTTCTCAGCATGCCCCATGATGATTCTAAGCCCTGTGTGAGATT
GTTTGGGCCCATGGGCAAGTACCACATGATGGCGCCATTCTTCATCCACGTGAACAAGACGCTGCCCTGG
TCTCCCTGCAGTGCTGTCTACCTCACAGAGCTCCTGGATGATGGTCACGGAGATTGTCTTCTGGATGCCC
CCACCTCGGTTCTGCCCCTCCCCACAGGCCTCCCGGGCCACAGCACCCTCTACGAGCTGGACCAGCAGTG
CAAGCAGATCTTTGGGCCTGATTTCCGACACTGCCCCAACACCTCTGTGGAGGACATCTGTGTCCAGCTC
TGGTGCCGTCATCGGGATAGTGATGAGCCCATTTGCCACACAAAGAATGGTAGCCTGCTCTGGGCTGATG
GTACACCCTGTGGCCCTGGGCACCTGTGCCTGGATGGTAGCTGTGTACTCAAGGAGGATGTGGAGAATCC
CAAGGCTGTGGTAGATGGAGACTGGGGTCCCTGGAGACCCTGGGGACAATGTTCTCGCACCTGTGGTGGA
GGGATACAATTCTCGAACCGTGAATGTGATAATCCAATGCCTCAGAATGGAGGAAGATTTTGCCTGGGTG
AAAGAGTCAAGTACCAATCATGCAACACAGAGGAATGTCCACCAAACGGAAAAAGCTTCCGGGAGCAGCA
GTGTGAGAAATATAATGCCTACAACCACACTGACCTGGATGGGAATTTCCTGCAGTGGGTCCCCAAGTAT
TCAGGAGTGTCCCCCCGAGACCGATGCAAGCTGTTTTGCAGAGCCCGTGGGAGGAGTGAGTTCAAAGTGT
TTGAAGCTAAGGTGATCGATGGCACTCTGTGTGGACCGGATACTCTGTCCATCTGCGTCCGGGGGCAATG
TGTTAAGGCTGGCTGTGACCATGTGGTGAACTCACCTAAGAAGCTGGACAAATGTGGGGTGTGTGGGGGC
AAAGGCACTGCCTGTAGGAAGATCTCCGGTTCTTTCACCCCCTTCAGTTATGGCTACAATGACATTGTCA
CCATCCCAGCTGGTGCCACAAACATTGATGTGAAACAGCGGAGTCACCCAGGGGTCAGGAACGACGGCAG
CTACCTGGCGCTGAAGACAGCCAATGGGCAGTACCTGCTCAATGGTAACCTGGCCATCTCTGCCATAGAG
CAAGACATCTTGGTGAAGGGGACCATCCTGAAGTACAGTGGCTCCATGGCTACCCTGGAGCGGCTGCAGA
GCTTCCAGGCCCTGCCTGAGCCTCTTACAGTACAGCTCCTGACTGTGTCTGGTGAGGTCTTCCCTCCAAA
AGTCAGATATACCTTCTTTGTCCCCAATGACATGGACTTCAGCGTGCAGAATAGCAAGGAAAGAGCAACC
ACCAACATCATTCAGTCACTGCCCTCTGCGGAGTGGGTTCTGGGAGACTGGTCTGAATGTCCGAGCACGT
GCAGAGGTAGCTGGCAGCGGCGGACTGTGGAATGCAGGGACCCCTCAGGTCAGGCCTCTGACACCTGTGA
TGAGGCTCTGAAACCTGAGGATGCCAAGCCCTGTGGAAGCCAGCCGTGTCCCCTCTGA

Translation (905 aa):
MLRDPTTTGWPPLLLLLLQLPPPPLVCGAPAGPGTGAQASELVVPTRLPGSASELAFHLSAFGQGFVLRL
APDASFLAPEFKIERLGGSSAAAGGEPGLRGCFFSGTVNGERESLAAMSLCRGLSGSFLLAGEEFTIQPQ
GAGDSLDQPHRLQRWGPGQRREDPGLAAAEVFPLPQGLEWEVEMGNGQGQERSDNEEDRKQDKEGLLKET
EDSRKVPPPFGSKTRSKRFVSEARFVETLLVADASMAAFYGTDLQNHILTVMSMAARIYKHPSIRNSVNL
VVVKVLIVEEEGWGPEVSDNGGLTLRNFCSWQRRFNKPSDRHPEHYDTAILFTRQNFCGKGEQCDTLGMA
DVGTICDPDKSCSVIKDEGLQAAYTLAHELGHVLSMPHDDSKPCVRLFGPMGKYHMMAPFFIHVNKTLPW
SPCSAVYLTELLDDGHGDCLLDAPTSVLPLPTGLPGHSTLYELDQQCKQIFGPDFRHCPNTSVEDICVQL
WCRHRDSDEPICHTKNGSLLWADGTPCGPGHLCLDGSCVLKEDVENPKAVVDGDWGPWRPWGQCSRTCGG
GIQFSNRECDNPMPQNGGRFCLGERVKYQSCNTEECPPNGKSFREQQCEKYNAYNHTDLDGNFLQWVPKY
SGVSPRDRCKLFCRARGRSEFKVFEAKVIDGTLCGPDTLSICVRGQCVKAGCDHVVNSPKKLDKCGVCGG
KGTACRKISGSFTPFSYGYNDIVTIPAGATNIDVKQRSHPGVRNDGSYLALKTANGQYLLNGNLAISAIE
QDILVKGTILKYSGSMATLERLQSFQALPEPLTVQLLTVSGEVFPPKVRYTFFVPNDMDFSVQNSKERAT
TNIIQSLPSAEWVLGDWSECPSTCRGSWQRRTVECRDPSGQASDTCDEALKPEDAKPCGSQPCPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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