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Report for CCDS40646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40646.1 Public Mus musculus 9 Man2c1 23 108 98 CCDS HistoryNCBI Gene:73744Re-query CCDS DB by CCDS ID:40646.1Re-query CCDS DB by GeneID:73744See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160147.7 ENSMUSP00000125478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160147.7Link to Ensembl Protein Viewer:ENSMUSP00000125478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160147Re-query CCDS DB by Protein ID:ENSMUSP00000125478
Original member Current member NCBI NM_028636.2 NP_082912.1 Accepted alive Link to Nucleotide Sequence:NM_028636.2Link to Protein Sequence:NP_082912.1Re-query CCDS DB by Nucleotide ID:NM_028636Re-query CCDS DB by Protein ID:NP_082912Link to BLAST:NP_082912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082912.1 1039 Q91W89 1039 100% 0 0

Chromosomal Locations for CCDS 40646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57130789 57130889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57131159 57131281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57131532 57131655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57133522 57133592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57135090 57135267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57135445 57135634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57136693 57136799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57136958 57137068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57137282 57137374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57137469 57137585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57137745 57137840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57137920 57138065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57138397 57138520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57138848 57138969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57139069 57139154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57139246 57139401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57139611 57139708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57139870 57139964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57140199 57140303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57140382 57140538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57140635 57140778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57141101 57141210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57141306 57141385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57141564 57141712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57141806 57141915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57141995 57142121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3120 nt):
ATGGCGGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGGAGAAGTTCGTGTCCCCGA
TCTACTTCACCGACTGTAACCTTCGCGGCAGGCTCTTCGGGGACAGCTGCTCGGTGACACTCTCCAGCTT
CCTGACGCCCGAGAGGCTTCCCTATGAGAAGGCGGTGCAGCAGAACTTCAGCCCTGCGCAGGTCGGCGAC
AGCTTCGGACCCACATGGTGGACCTGCTGGTTTCGGGTAGAACTGGTCATCCCTGAAGTTTGGGTGGGCC
AGGAAGTTCATCTTTGCTGGGAAAGCGATGGAGAAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGG
TTTGACCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCGAGAGGCTGCGAGCATCAGACCCTCGGAGC
TTGACTCTCTATGTGGAAGTAGCCTGCAATGGGCTTCTGGGGGCCGGGAAGGGAAGCATGATCGCAGCCC
CTGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCT
CCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGGCCTCGGGGAGGACAGCCAGCGCAGCTTCCAG
GCCCTGCACACAGCCAACCAGATGGTGAACATATGTGACCCTGCTCAGCCTGAGACTTACCCAGCAGCCA
AAGCCCTGGCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACA
CTGTCACATTGATACAGCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCG
ACAGCTGTGACGCTCATGGAGCAGAACACAGACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAAT
GGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGGACAGTTTGTGCC
TGTGGGGGGCACCTGGGTAGAAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGTTCCTG
CAGGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATGTGCTCTGAGTTCTGGCTGCCAGACACGTTTG
GCTACTCAGCACAGCTCCCCCAGATCATGCAAGGCTGTGGCATCAAGCGCTTCCTGACCCAGAAACTGAG
CTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTG
GTCCACTTCCCACCTGGAGACTCATATGGAATGCAGGGCAGTGTGGAGGAGGTGCTGAAGACTGTGACCA
ACAACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTTCGGCTTCGGGGATGGGGGAGGTGGCCC
CACACAGACCATGTTGGACCGATTGAAGCGGCTGAGCAACACTGATGGGCTGCCCAGGGTGCAGCTATCT
TCTCCTGGCCAGCTCTTCACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACATGGGTTGGAGAACTCT
TCCTGGAACTGCACAATGGCACCTACACTACGCATGCCCAGCTCAAGAAGGGGAACAGAGAATGTGAGCA
GATTCTTCATGACGTGGAGGTGCTCAGCAGCCTGGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGCA
GCCCAGCTGCAGCACCTCTGGAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGTGACTGGAAGCTGCA
TTCAGCTGGTGGCAGAAGATGCCATGAACTACTATGAAGACATCCGTTCTCATGGCAACCCACTGCTCAG
TGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTCATTATCAACACACTGCCC
TGGAAGCGCACTGAAGTGTTGGCACTGCCCAAGCCTTGTGGGGCTCACAGCCTAGCCCTGGTGACAGTGC
CAAGTATTGGCTACGCTCCTGCTCCCACCCCTACTTCACTGCAGCCCCTCCTCCCCCAGCAGCCTGTGTT
TGTGATGCAGGAGACTGACGGTTCTGTGACTTTGGACAACGGCATCATCCGGGTGAGACTGGATCCAACT
GGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTGAGGGAGCCCTGGGGAACC
AGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCATCTAGAGAC
ACGGAAGCCTGTGCTGGGCCAGGCAGGGACCCTGGCAGTGGGCACTGAAGGTGGCCTCCGGGGCAGTGCC
TGGTTCCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGATGTTGGCTGCCCCT
ATGTCCGCTTCCACACTGAGGTGCACTGGCACGAGGCCCACAAGTTCCTGAAGGTGGAGTTCCCTGCTAG
AATACGGAGCCCCCAGGCTACCTATGAGATCCAGTTTGGGCACCTCCAGAGGCCGACGCACAACAACACC
TCTTGGGACTGGGCTCGCTACGAGGTGTGGGCTCACCGCTGGATAGATCTGTCCGAGTGTGACTTTGGGC
TGGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTCACTGTTGCG
TGCACCCAAGGCTCCAGACGCTACTGCTGACATGGGGCGCCATGAATTCACTTACGCTTTGATGCCACAC
AAGGGCTCCTTCCAAGAAGCTGGTGTCATCCATGCTGCCTACAACCTCAACTTTCCCCTGCTGGCACTGC
CGGCTCCAGGCCCGGCCCCTGACACCACCTGGAGTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTGGA
GACCATCAAGCAGGCTGAGAGGTGCCATCAGCACCGCACACTGGTTCTAAGGCTGTACGAGGCTCATGGC
AGCCATGTGGACTGCTGGCTGCACACGTCGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCCTGGAGC
AGCGAGACCCCACTGGTCACCTTTCCCTCCAGGACAACCGTCTGAAGCTCACTTTTTCTCCCTTCCAAGT
GAGATCCCTATTGCTTGTGCTTCAGTCTCCACCAAACTGA

Translation (1039 aa):
MAAAPFLKHWRTTFERVEKFVSPIYFTDCNLRGRLFGDSCSVTLSSFLTPERLPYEKAVQQNFSPAQVGD
SFGPTWWTCWFRVELVIPEVWVGQEVHLCWESDGESLVWRDGEPVQGLTKEGEKTSYVLSERLRASDPRS
LTLYVEVACNGLLGAGKGSMIAAPDPEKMFQLSQAKLAVFHRDVHSLLVDLELLLGVAKGLGEDSQRSFQ
ALHTANQMVNICDPAQPETYPAAKALASKFFGQHGGESQHTIHAMGHCHIDTAWLWPFKETVRKCARSWS
TAVTLMEQNTDFIFACSQAQQLEWVKSQYPGLHARLQEFACRGQFVPVGGTWVEMDGNLPSGEAMVRQFL
QGQNFFLQEFGKMCSEFWLPDTFGYSAQLPQIMQGCGIKRFLTQKLSWNLVNSFPHHTFFWEGLDGSRVL
VHFPPGDSYGMQGSVEEVLKTVTNNRDKGRTNHSGFLFGFGDGGGGPTQTMLDRLKRLSNTDGLPRVQLS
SPGQLFTALERDSGQLCTWVGELFLELHNGTYTTHAQLKKGNRECEQILHDVEVLSSLALARSAQFLYPA
AQLQHLWRLLLLNQFHDVVTGSCIQLVAEDAMNYYEDIRSHGNPLLSAAAAALCAGEPGPKGLLIINTLP
WKRTEVLALPKPCGAHSLALVTVPSIGYAPAPTPTSLQPLLPQQPVFVMQETDGSVTLDNGIIRVRLDPT
GCLTSLVLVASGREAIAEGALGNQFVLFDDVPLYWDAWDVMDYHLETRKPVLGQAGTLAVGTEGGLRGSA
WFLLQISPNSRLSQEVVLDVGCPYVRFHTEVHWHEAHKFLKVEFPARIRSPQATYEIQFGHLQRPTHNNT
SWDWARYEVWAHRWIDLSECDFGLALLNNCKYGASVRGNVLSLSLLRAPKAPDATADMGRHEFTYALMPH
KGSFQEAGVIHAAYNLNFPLLALPAPGPAPDTTWSAFSVSSPAVVLETIKQAERCHQHRTLVLRLYEAHG
SHVDCWLHTSLPVQEATLCDLLEQRDPTGHLSLQDNRLKLTFSPFQVRSLLLVLQSPPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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