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Report for CCDS24840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24840.1 Public Mus musculus 11 Hs3st3a1 23 108 98 CCDS HistoryNCBI Gene:15478Re-query CCDS DB by CCDS ID:24840.1Re-query CCDS DB by GeneID:15478See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058652.5 ENSMUSP00000055930.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058652.5Link to Ensembl Protein Viewer:ENSMUSP00000055930.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058652Re-query CCDS DB by Protein ID:ENSMUSP00000055930
Original member Current member NCBI NM_178870.5 NP_849201.1 Accepted alive Link to Nucleotide Sequence:NM_178870.5Link to Protein Sequence:NP_849201.1Re-query CCDS DB by Nucleotide ID:NM_178870Re-query CCDS DB by Protein ID:NP_849201Link to BLAST:NP_849201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849201.1 393 Q8BKN6 393 100% 0 0

Chromosomal Locations for CCDS 24840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64436067 64436626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64520198 64520819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCCCCCTCGGGTCCCACCGGCGCCCAGCCCAGCCCGGCGGAGCCACTGTCGCGCAGCATCTTCAGGA
AGTTCTTGCTGATGCTCTGCTCGCTACTCACTTCCCTCTACGTCTTCTACTGCCTGGCGGAGCGCTGCCC
ACCCGGCTCGGGCCCCGTCGCGGGGGTCCCGGGGCGCGGCGTCCCTGCAGGACCCAGGGAACTGGCGATG
TGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGGCGCGGGCGGTCGGGGC
CAGGAGACAGCAGCGACCAGGAGGAGCAGAGCCCTGGGCTGGCCGCCGCACCAGGAGGCTCCGGGGCGGG
AAGCAGCGTGGCCGAGGCCCAGCCGGGGACCCTGGCCTTACTTCTGGACGAGGGCAGCAAGCAGCTGCCG
CAGGCCATCATCATCGGCGTGAAGAAGGGCGGCACGCGGGCGCTGCTGGAGTTCCTGCGCGTGCACCCCG
ACGTGCGTGCCGTGGGTGCTGAGCCCCACTTTTTTGACCGCAGCTACCACAAGGGCCTCGCCTGGTACCG
GGATTTGATGCCCAGAACCCTCGAGGGACAGATCACCATGGAGAAGACGCCCAGCTACTTTGTGACCCGG
GAGGCACCCGCGCGCATCTCGGCCATGTCCAAGGACACCAAACTCATCGTGGTGGTGCGCGACCCGGTGA
CCAGGGCCATCTCGGACTACACGCAGACGCTGTCCAAGCGGCCGGACATCCCCAGCTTCGAGAGCCTGAC
GTTCCGCAACCGCAGCGCGGGCCTCATAGACACGTCCTGGAGCGCCATCCAGATCGGCCTGTACGCCAAG
CACCTGGAGCCCTGGCTGCGCCACTTCCCGCTCGGCCAGATGCTCTTCGTGAGCGGGGAGCGGCTGGTCA
GCGACCCGGCCGGCGAGCTGCGCCGCGTGCAGGATTTCCTGGGCCTCAAGCGCATCATCACCGACAAGCA
CTTCTACTTCAACCAGACCAAGGGCTTCCCGTGCCTCAAGAAGGCGGAGGGCAGCGGCAAGCCGCACTGC
CTGGGCAAGACTAAGGGCCGCGCTCACCCCACCATTGCGCGGGAGGTGCTGCGGCAGCTGCGTGACTTTT
ACCGGCCCTTCAACCGCAAGTTCTACCAGATGACCGGCCGCGACTTTGGCTGGGATGGATAG

Translation (393 aa):
MAPSGPTGAQPSPAEPLSRSIFRKFLLMLCSLLTSLYVFYCLAERCPPGSGPVAGVPGRGVPAGPRELAM
WPAGAPRKRLLQLRQRRRRGRSGPGDSSDQEEQSPGLAAAPGGSGAGSSVAEAQPGTLALLLDEGSKQLP
QAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYHKGLAWYRDLMPRTLEGQITMEKTPSYFVTR
EAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPSFESLTFRNRSAGLIDTSWSAIQIGLYAK
HLEPWLRHFPLGQMLFVSGERLVSDPAGELRRVQDFLGLKRIITDKHFYFNQTKGFPCLKKAEGSGKPHC
LGKTKGRAHPTIAREVLRQLRDFYRPFNRKFYQMTGRDFGWDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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