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Report for CCDS85811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85811.1 Public Mus musculus X Trpc5os 23 108 98 CCDS HistoryNCBI Gene:100503240Re-query CCDS DB by CCDS ID:85811.1Re-query CCDS DB by GeneID:100503240See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178233.1 ENSMUSP00000147698.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178233.1Link to Ensembl Protein Viewer:ENSMUSP00000147698.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178233Re-query CCDS DB by Protein ID:ENSMUSP00000147698
Original member Current member EBI ENSMUST00000155206.7 ENSMUSP00000148184.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155206.7Link to Ensembl Protein Viewer:ENSMUSP00000148184.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155206Re-query CCDS DB by Protein ID:ENSMUSP00000148184
Original member Current member NCBI NM_001195579.1 NP_001182508.1 Accepted alive Link to Nucleotide Sequence:NM_001195579.1Link to Protein Sequence:NP_001182508.1Re-query CCDS DB by Nucleotide ID:NM_001195579Re-query CCDS DB by Protein ID:NP_001182508Link to BLAST:NP_001182508.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182508.1 110 Q3UHV4 110 100% 0 0

Chromosomal Locations for CCDS 85811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 144473885 144474217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGAATCTGTGTCTATCCCTGTACTGGTTGCCGGACTGATTGATTGTGTAGCCCAGCTAATAAGAATAG
CTGAGGATCTACTACAGTTCATCTCGCAGGAACAAGTCCCTTCCGTGCAACAGAACGCTAGAGCAGAAGA
GGCAGAAGCAGCTGCACCTCCTGCCGAGGAAGATTCCTTACCGGATCTCGCGGATCTTTCCGACTTAGAA
TCAATCCTTTCAGTAAGAGAAGACGATGACCTAATCCTTGACACGGATGAAACTATGATAGATATCAACG
AGATATACAAGGATATACTTCCTGCCATAAAGGATGATACGGAAAGTGAGTGA

Translation (110 aa):
MESVSIPVLVAGLIDCVAQLIRIAEDLLQFISQEQVPSVQQNARAEEAEAAAPPAEEDSLPDLADLSDLE
SILSVREDDDLILDTDETMIDINEIYKDILPAIKDDTESE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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