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Report for CCDS55998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55998.1 Public Homo sapiens 16 USB1 24 110 108 CCDS HistoryNCBI Gene:79650Re-query CCDS DB by CCDS ID:55998.1Re-query CCDS DB by GeneID:79650See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539737.6 ENSP00000446143.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539737.6Link to Ensembl Protein Viewer:ENSP00000446143.2Re-query CCDS DB by Nucleotide ID:ENST00000539737Re-query CCDS DB by Protein ID:ENSP00000446143
Original member Current member NCBI NM_001195302.2 NP_001182231.1 Accepted alive Link to Nucleotide Sequence:NM_001195302.2Link to Protein Sequence:NP_001182231.1Re-query CCDS DB by Nucleotide ID:NM_001195302Re-query CCDS DB by Protein ID:NP_001182231Link to BLAST:NP_001182231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182231.1 247 Q9BQ65-2 247 100% 0 0

Chromosomal Locations for CCDS 55998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58001484 58001581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58002479 58002645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58009929 58010112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58017334 58017439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58018972 58019055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58020141 58020245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGAGCGCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGCTCCGAGGATGAGTCCGAGGACGGGATGCGGA
CCAGGCCGGGGGATGGGAGCCACCGTCGTGGCCAGAGCCCCCTTCCCAGGCAGAGATTTCCAGTACCTGA
CAGTGTGCTGAACATGTTCCCGGGCACCGAGGAGGGGCCTGAAGATGACAGCACAAAACACGGGGGACGG
GTGCGCACCTTCCCCCACGAGCGAGGCAACTGGGCCACCCACGTCTATGTACCATATGAAGCCAAGGAGG
AGTTCCTGGATCTGCTTGATGTGTTGCTGCCCCATGCCCAGACATATGTCCCCCGGCTGGTAAGGATGAA
GGTGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCACCACTGGATCCTCCCCTTCGTGCAGGCT
CTGAAAGCCCGTATGACCTCCTTCCACAGGACCTTTATTGGGCTTGAGGTCACTTCAGGGCATGCCCAGT
TCCTGGACCTGGTTTCAGAGGTGGACAGAGTCATGGAGGAATTCAACCTCACCACTTTCTACCAGGATCC
TTCTTTCCACCTCAGCCTGGCCTGGTGTGTGGGTGATGCACGTCTCCAGCTGGAGGGGCAGTGCCTGCAG
GAACTACAGGCAATCGTGGATGGGTTTGAAGATGCTGAGGTGCTGCTGCGCGTGCACACTGAGCAAGTCC
GCTGCAAGTCTGGGAACAAGTTCTTCTCGATGCCTTTGAAGTGA

Translation (247 aa):
MSAAPLVGYSSSGSEDESEDGMRTRPGDGSHRRGQSPLPRQRFPVPDSVLNMFPGTEEGPEDDSTKHGGR
VRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVFHLSLSQSVVLRHHWILPFVQA
LKARMTSFHRTFIGLEVTSGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQ
ELQAIVDGFEDAEVLLRVHTEQVRCKSGNKFFSMPLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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