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Report for CCDS72373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72373.1 Public Mus musculus X Tex13c1 23 108 98 CCDS HistoryNCBI Gene:637093Re-query CCDS DB by CCDS ID:72373.1Re-query CCDS DB by GeneID:637093See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 72373.1
This CCDS representation is partially supported at the 3' end by the mouse EST AV262385.1. The full-length nature is inferred based on mouse RNA-Seq data and the orthologous rat mRNA, BC128763.1.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 72373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105113.3 ENSMUSP00000100745.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105113.3Link to Ensembl Protein Viewer:ENSMUSP00000100745.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105113Re-query CCDS DB by Protein ID:ENSMUSP00000100745
Original member Current member NCBI NM_001195271.1 NP_001182200.1 Accepted alive Link to Nucleotide Sequence:NM_001195271.1Link to Protein Sequence:NP_001182200.1Re-query CCDS DB by Nucleotide ID:NM_001195271Re-query CCDS DB by Protein ID:NP_001182200Link to BLAST:NP_001182200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182200.1 604 D3YU32 604 100% 0 0

Chromosomal Locations for CCDS 72373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 43591160 43592974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGCAATTGAATTTGGAGACCATAGCAGCGGCTTCCACCATACTGAAGTAATCAGATTCATTAATAATG
AAGTCCTTAAGAATGGAGGGAGTTCTGAATTCTATACGACCTTTCGCTCTCGGTCTTGGAATGAAATAGA
AGATCAGCTTCGTACCATCCTTGTTGACCCCAAAGTGCCACGCTCCCTCAAGAGGGCTTGTACCTGGAGT
GCTTTGGCTTTGAGTGTGAGAGTGGCTGCCAGGCAACGCCAGCAGCAGGCGCGGAGAGTTTGGAGGTTGC
AGGACCAGGTGGGAGAGCATGAGTCAGCTTCCTGGACTCTGGTCTCTGAACTACAGAGGTTGCGAGAAGA
GAGGGACCAGGCAGCTGCTCAACTTTTGTGTACACAGATTATCCTCCAGGAGGCAATGGATGAGCGGGAA
ATACTTCGTGGGAGGCTGCTACAAGCAAAGAGATCTGCACTGCCTGTTGTGCCTGAACGTGGAATGGAAT
ATGGTAAAACATCACTGTTGTCGTTTGAGGAAAAGGAGCTGGGAGACCTGGAATTTATAGGGTCCCAGAA
CATGTCCCATTTGGAGGCCCAGATACCAATCTTGTCCTGCCTGCCTGGACTTTCAAGTCCTTGGGTCCAA
GCAATGGATCCCTTTCTTCAAATGACTATGGCACATCCAGTACCACTCAAAGCAAAATTCTCCTTGGAAT
TCTCATTTTCAACACCTGTACCATGTCCAGCATTAATGGACTCAGAAGCAACAGCAACAGCCATGATCAC
AGGCTTACCTCAGATAGCTCCTTCAGGAATCCAACCATCTAGCTTGTGTGTTACATTGGAGTCCCAAGAA
ACAATAGCTTCTGCTTTGGACCAAATCTGCCCTAGGCAGAAGGAATGCTCTGAGATCCTCCAGGATGTAA
GTCACCTGGCAGACAGCATAAGCTGCTGTGAAGGAGAAGGTCCAGAGAAACCTCAAGGAACATCTCTCCA
TGGGGACAGCAGCAACAATAGCCACAAAGATAATCAGGCCATACCCCAGATAATGGCTGCCACTGAGAAG
AAAAATCTAATGATGCACCAGGGAACAGCTGCAGTGGAGGTCAACAGTAACCACAGCATAAAGGAAGAAC
CAGTAATGCCCAAAGGGATATCTTCCCAGGGGAACAAAACCAGCTCCACCAAGAAGAAACGTCCAAAAAT
TTCCCGGAGGGTGGTTGGCTTGATAGAGAGCATCAGCCACAACACCCAATGTGTTTCTGTAACTCCCCAG
GAGACACATACTCAAGTGAACAAAACCACCTCTACCCTGAAAACCTATCCAGGGAATCTCTTGAGGAAGC
CTGACCAGGGAAAGATACTTAGCTGTAACCAGAAAGAGGATTCAAAGACACTACAGAGGCTGACTGACCT
GGGAGAAGGAACCAGAAATTGCCAGAAAGAAGACACTTTTCAGCAGACGACATGCCTGAATGCTGGTGTG
AGTCCTAATGAGAAGAAAATGCCACAAGGGACTGGCAAGAACCAGAGCCAGAGACAGAAGGAAGAGCCAA
ACAGCTTCCAAGCAAACCACCCGAGAAAATGTAAAAGTTATTTAATGAATAAATACCCTAAAATCCAACT
GGCTACAAAGCAAAGGGTCAAGCAACCTGAAGGGATAAAATCTTTAGAATCTAAGCAACCTCAAGAGACA
AAATCCTCTGAATCCAAGCAACAAGAAAAACCCCTCTCACACCGTACTTCAGCGAATTGCATCTGTCCAT
CAAGTAAAACTGTGAATCGCTCATGGTACAAGGGTTGCTATAAATGTGCAAAAACAAGTGCTTAA

Translation (604 aa):
MAIEFGDHSSGFHHTEVIRFINNEVLKNGGSSEFYTTFRSRSWNEIEDQLRTILVDPKVPRSLKRACTWS
ALALSVRVAARQRQQQARRVWRLQDQVGEHESASWTLVSELQRLREERDQAAAQLLCTQIILQEAMDERE
ILRGRLLQAKRSALPVVPERGMEYGKTSLLSFEEKELGDLEFIGSQNMSHLEAQIPILSCLPGLSSPWVQ
AMDPFLQMTMAHPVPLKAKFSLEFSFSTPVPCPALMDSEATATAMITGLPQIAPSGIQPSSLCVTLESQE
TIASALDQICPRQKECSEILQDVSHLADSISCCEGEGPEKPQGTSLHGDSSNNSHKDNQAIPQIMAATEK
KNLMMHQGTAAVEVNSNHSIKEEPVMPKGISSQGNKTSSTKKKRPKISRRVVGLIESISHNTQCVSVTPQ
ETHTQVNKTTSTLKTYPGNLLRKPDQGKILSCNQKEDSKTLQRLTDLGEGTRNCQKEDTFQQTTCLNAGV
SPNEKKMPQGTGKNQSQRQKEEPNSFQANHPRKCKSYLMNKYPKIQLATKQRVKQPEGIKSLESKQPQET
KSSESKQQEKPLSHRTSANCICPSSKTVNRSWYKGCYKCAKTSA


Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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