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Report for CCDS31676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31676.1 Public Homo sapiens 11 LAYN 24 110 108 CCDS HistoryNCBI Gene:143903Re-query CCDS DB by CCDS ID:31676.1Re-query CCDS DB by GeneID:143903See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375614.7 ENSP00000364764.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375614.7Link to Ensembl Protein Viewer:ENSP00000364764.2Re-query CCDS DB by Nucleotide ID:ENST00000375614Re-query CCDS DB by Protein ID:ENSP00000364764
Original member Current member NCBI NM_178834.5 NP_849156.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178834.5Link to Protein Sequence:NP_849156.1Re-query CCDS DB by Nucleotide ID:NM_178834Re-query CCDS DB by Protein ID:NP_849156Link to BLAST:NP_849156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849156.1 374 Q6UX15-2 374 100% 0 0

Chromosomal Locations for CCDS 31676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111540844 111540928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111543923 111544220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111549618 111549775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111554561 111554593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111555207 111555290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111557541 111557643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111560095 111560458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGAGGCCGGGAACCGCGCTACAGGCCGTGCTGCTGGCCGTGCTGCTGGTGGGGCTGCGGGCCGCGACGG
GTCGCCTGCTGAGTGGGCAGCCAGTCTGCCGGGGAGGGACACAGAGGCCTTGTTATAAAGTCATTTACTT
CCATGATACTTCTCGAAGACTGAACTTTGAGGAAGCCAAAGAAGCCTGCAGGAGGGATGGAGGCCAGCTA
GTCAGCATCGAGTCTGAAGATGAACAGAAACTGATAGAAAAGTTCATTGAAAACCTCTTGCCATCTGATG
GTGACTTCTGGATTGGGCTCAGGAGGCGTGAGGAGAAACAAAGCAATAGCACAGCCTGCCAGGACCTTTA
TGCTTGGACTGATGGCAGCATATCACAATTTAGGAACTGGTATGTGGATGAGCCATCCTGCGGCAGCGAG
GTCTGCGTGGTCATGTACCATCAGCCATCGGCACCCGCTGGCATCGGAGGCCCCTACATGTTCCAGTGGA
ATGATGACCGGTGCAACATGAAGAACAATTTCATTTGCAAATATTCTGATGAGAAACCAGCAGTTCCTTC
TAGAGAAGCTGAAGGTGAGGAAACAGAGCTGACAACACCTGTACTTCCAGAAGAAACACAGGAAGAAGAT
GCCAAAAAAACATTTAAAGAAAGTAGAGAAGCTGCCTTGAATCTGGCCTACATCCTAATCCCCAGCATTC
CCCTTCTCCTCCTCCTTGTGGTCACCACAGTTGTATGTTGGGTTTGGATCTGTAGAAAAAGAAAACGGGA
GCAGCCAGACCCTAGCACAAAGAAGCAACACACCATCTGGCCCTCTCCTCACCAGGGAAACAGCCCGGAC
CTAGAGGTCTACAATGTCATAAGAAAACAAAGCGAAGCTGACTTAGCTGAGACCCGGCCAGACCTGAAGA
ATATTTCATTCCGAGTGTGTTCGGGAGAAGCCACTCCCGATGACATGTCTTGTGACTATGACAACATGGC
TGTGAACCCATCAGAAAGTGGGTTTGTGACTCTGGTGAGCGTGGAGAGTGGATTTGTGACCAATGACATT
TATGAGTTCTCCCCAGACCAAATGGGGAGGAGTAAGGAGTCTGGATGGGTGGAAAATGAAATATATGGTT
ATTAG

Translation (374 aa):
MRPGTALQAVLLAVLLVGLRAATGRLLSGQPVCRGGTQRPCYKVIYFHDTSRRLNFEEAKEACRRDGGQL
VSIESEDEQKLIEKFIENLLPSDGDFWIGLRRREEKQSNSTACQDLYAWTDGSISQFRNWYVDEPSCGSE
VCVVMYHQPSAPAGIGGPYMFQWNDDRCNMKNNFICKYSDEKPAVPSREAEGEETELTTPVLPEETQEED
AKKTFKESREAALNLAYILIPSIPLLLLLVVTTVVCWVWICRKRKREQPDPSTKKQHTIWPSPHQGNSPD
LEVYNVIRKQSEADLAETRPDLKNISFRVCSGEATPDDMSCDYDNMAVNPSESGFVTLVSVESGFVTNDI
YEFSPDQMGRSKESGWVENEIYGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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