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Report for CCDS30484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30484.1 Public Mus musculus X Kctd12b 23 108 98 CCDS HistoryNCBI Gene:207474Re-query CCDS DB by CCDS ID:30484.1Re-query CCDS DB by GeneID:207474See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039424.13 ENSMUSP00000037539.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039424.13Link to Ensembl Protein Viewer:ENSMUSP00000037539.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039424Re-query CCDS DB by Protein ID:ENSMUSP00000037539
Original member Current member EBI ENSMUST00000112572.2 ENSMUSP00000108191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112572.2Link to Ensembl Protein Viewer:ENSMUSP00000108191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112572Re-query CCDS DB by Protein ID:ENSMUSP00000108191
Original member Current member NCBI NM_175429.4 NP_780638.1 Accepted alive Link to Nucleotide Sequence:NM_175429.4Link to Protein Sequence:NP_780638.1Re-query CCDS DB by Nucleotide ID:NM_175429Re-query CCDS DB by Protein ID:NP_780638Link to BLAST:NP_780638.1

Chromosomal Locations for CCDS 30484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153688813 153689691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCCATGCCAGAAAAGTCAAGTGATGTCAAACCGACCGAGGAGTGCGGCAGTTTTCCTGAGATTATTG
AACTCAATGTAGGTGGCCAGGTGTACATAACTCGCTATCCTACTTTGATCAGCATTCCTGGTTCCCGGCT
CTGGGAAATGTTCAGTGTAAAGAATCCTTGCTCACTGATCCAGGACAACAAAGGGAGATTCTTCATAGAT
CGAGATGGTTTTCTCTTTCGCTATGTCCTAGACTATATGAGAGACATGCAAGTAGTGCTTCCGGATCATT
TTCCAGAGTGTGGCCGGCTCCATAGAGAAGCAGAATACTTTAAGCTGCCAGAACTAGCCAAAATGTTGGC
TCCTAAAATGAACAAGCTCAACTCAATTGGAAATGACTCATGTCCGATTGATCTAGAAGAGCTCTCACCC
AGCATTGACACTACGTTCAATTTCTCTTCAACCAATAGCATTCATATTAGTGGCCCTGATAATCCCATGG
TTCTGAGAGCTGCCCCTGGTTCTGAGCTCAAGAAGGCTGGTTTCATCACTATTGGCTATCGAGGCTCCTA
TACTCTGGGCAGGGACAGCCAAGCAGATGCCAAATTCCGCCGTGTGGCTAGAATCATGGTATGTGGTAAG
ATCTCATTAGCCAAAGAAGTGTTCGGAGACACTCTGAATGAGAGCAGAGACCCAGATCGCCCTCCAGAGC
GATATACTTCTCGATACTACCTCAAATTCACTTTCTTGGAACAAGCTTTTGACAAACTAGCTGATGCTGG
CTTCCACATGGTAGCATGCAACTCCACTGGCACCTGCACTGTCACACATGACCAAACAGATGACAGGATC
TGGACCTCGTATACTGAATATGTTTTCTATCGTGAGTGA

Translation (292 aa):
MAMPEKSSDVKPTEECGSFPEIIELNVGGQVYITRYPTLISIPGSRLWEMFSVKNPCSLIQDNKGRFFID
RDGFLFRYVLDYMRDMQVVLPDHFPECGRLHREAEYFKLPELAKMLAPKMNKLNSIGNDSCPIDLEELSP
SIDTTFNFSSTNSIHISGPDNPMVLRAAPGSELKKAGFITIGYRGSYTLGRDSQADAKFRRVARIMVCGK
ISLAKEVFGDTLNESRDPDRPPERYTSRYYLKFTFLEQAFDKLADAGFHMVACNSTGTCTVTHDQTDDRI
WTSYTEYVFYRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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