NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35581.1 Public Mus musculus 1 Flacc1 23 108 98 CCDS HistoryNCBI Gene:108812Re-query CCDS DB by CCDS ID:35581.1Re-query CCDS DB by GeneID:108812See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055313.13 ENSMUSP00000062497.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055313.13Link to Ensembl Protein Viewer:ENSMUSP00000062497.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055313Re-query CCDS DB by Protein ID:ENSMUSP00000062497
Original member Current member NCBI NM_175370.5 NP_780579.1 Accepted alive Link to Nucleotide Sequence:NM_175370.5Link to Protein Sequence:NP_780579.1Re-query CCDS DB by Nucleotide ID:NM_175370Re-query CCDS DB by Protein ID:NP_780579Link to BLAST:NP_780579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780579.1 383 Q8BVM7-1 383 100% 0 0

Chromosomal Locations for CCDS 35581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58658424 58658430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58658996 58659105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58659223 58659312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58661400 58661462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58666827 58666930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58667729 58667828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58669428 58669480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58670370 58670467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58676529 58676590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58678286 58678379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58679864 58679997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58690913 58690958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58691705 58691782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58692301 58692413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGACCCCAATCCTTTCATCTACTGTACCTGCTGTGACTGCTGCAAATTGGGACAACCAAAGCTAATCA
AGACCCCTTATCCACTTCCAAAGCACCCCACGGGGAAGTTTAAGCCAGTTTTACCTCCACCAATTTCAAA
AGAACACAACTCACTCCTGTCCCAACCAGGAAAATCTACTGTTTCCCCAAGGGACAAGGTCCAGTCAGGA
AACACAGAGAGCAGCAAAGCACCTTCTGAAGTGATTCAAGTGTCACCTGGCTATACACTCATTCGAAATC
GAGAACAGATATCAGTCACCTTGGGAGATGAGATGTTCAACAGGAAAAAGCACTTGGAATCAGATGTCTT
GAGCAAAGTCAAATTTTCCAGGACTGATATCATTTCTGACCTTCAGGAGCAAATTGCTGAGTTGATGGCA
ATAATAGAACAGATGAACAGAGACCAGCAGTCTGCCCTGAAACTGCTCTCCAAAGATCTGGATCTCCGCT
GTTCCAACATGAAGCAGAAGTTTGAAACCGAGAGCAGGGAACTCAAAGAGACTCACAGAGAGGAGCTCGA
GAGGTTAGAGAACAACTACAAGGAGGCCCTGAAGGCAGAAAAGGCCTTGGCCGAAGAGAAACTAGATAAG
ATGAGCAAGGAATATAAGTATCTGAAGAGTATGTTCCATGTGTTTCAGGATAGCATTTACGAGGAAATGG
AAGACAAGTGGCTGAGACGAAAGGCCGAATGGGAGAAAGATGAGAAGATGGAGCGGGAAAAGATCCTGCT
ACAACAAAAATGTAGAATAATAAAAAAGTTTGAGTTACAGTCGGAAGAAAAAAAGAAGAAAATGAATGAG
TCCATCAGTGCTGTTTCTGATAACTTCGCTCGAGAGAAAGAGGAGCTCCTAAGACAACATGATGAAGACA
TCCTGCAAATACAGGAGCTGAGAAAATCCAAAGAGATCTTGGAGGCTGAGTTGCGGGCACAAGCTACTGT
TCTGGAGACCCTGAACACAAACCTTTTCCAATGCCAGAAAGAACTCGAGAGACAGAAAACTATTGCGGCA
AATCTAGAGAAATTGTTCCAGACAAAGCTTGCTGAAGCTGAAGAAAAGCATAAGTACAACATAAAGACCC
CGACAGAAGAAAATAACTGCCTCAGATGTTAA

Translation (383 aa):
MDPNPFIYCTCCDCCKLGQPKLIKTPYPLPKHPTGKFKPVLPPPISKEHNSLLSQPGKSTVSPRDKVQSG
NTESSKAPSEVIQVSPGYTLIRNREQISVTLGDEMFNRKKHLESDVLSKVKFSRTDIISDLQEQIAELMA
IIEQMNRDQQSALKLLSKDLDLRCSNMKQKFETESRELKETHREELERLENNYKEALKAEKALAEEKLDK
MSKEYKYLKSMFHVFQDSIYEEMEDKWLRRKAEWEKDEKMEREKILLQQKCRIIKKFELQSEEKKKKMNE
SISAVSDNFAREKEELLRQHDEDILQIQELRKSKEILEAELRAQATVLETLNTNLFQCQKELERQKTIAA
NLEKLFQTKLAEAEEKHKYNIKTPTEENNCLRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH