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Report for CCDS29446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29446.1 Public Mus musculus 19 B4gat1 23 108 98 CCDS HistoryNCBI Gene:108902Re-query CCDS DB by CCDS ID:29446.1Re-query CCDS DB by GeneID:108902See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053705.7 ENSMUSP00000062016.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053705.7Link to Ensembl Protein Viewer:ENSMUSP00000062016.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053705Re-query CCDS DB by Protein ID:ENSMUSP00000062016
Original member Current member EBI ENSMUST00000236560.1 ENSMUSP00000158273.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236560.1Link to Ensembl Protein Viewer:ENSMUSP00000158273.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236560Re-query CCDS DB by Protein ID:ENSMUSP00000158273
Original member Current member NCBI NM_175383.2 NP_780592.1 Accepted alive Link to Nucleotide Sequence:NM_175383.2Link to Protein Sequence:NP_780592.1Re-query CCDS DB by Nucleotide ID:NM_175383Re-query CCDS DB by Protein ID:NP_780592Link to BLAST:NP_780592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780592.1 415 Q8BWP8-1 415 100% 0 0

Chromosomal Locations for CCDS 29446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5038977 5040032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5040307 5040498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCAAATGTCCTACGCCATCCGATGCGCCTTCTACCAGCTGCTGCTGGCCGCGCTCATGTTGGTGGCAA
TGCTGCAGCTGCTCTACCTATCGCTGCTCTCTGGACTGCACGGCCAGGAGGAGCAGGAACAGTATTTCGA
GTTCTTCCCGCCGTCTCCGCGATCCGTAGACCAGGTAAAGTCTCAACTCCGCACCGCACTGGCCTCCGGA
GGCGTTCTAGATGCCAGCGGCGATTATCGCGTCTACAGGGGTCTATTGAAGACCACCATGGACCCCAACG
ATGTCATCTTAGCTACGCATGCCAGTGTGGACAACCTACTACACCTGTCCGGACTTCTGGAGCGCTGGGA
GGGTCCGCTGTCCGTTTCAGTGTTCGCGGCCACCAAAGAGGAGGCGCAGCTGGCCACGGTGCTGGCCTAC
GCGCTGAGTAGCCACTGCCCCGAGATGCGCGCCAGGGTCGCCATGCACCTCGTGTGCCCCTCGCGCTATG
AGGCTGCTGTGCCCGACCCCCGAGAACCTGGAGAGTTTGCCCTGCTGCGGTCCTGCCAAGAGGTCTTTGA
CAAGCTAGCCAGGGTGGCCCAGCCCGGGATTAATTATGCACTAGGGACCAACACCTCCTATCCCAATAAC
CTGTTAAGGAATCTGGCTCGGGAAGAGGCCAACTACGCCCTGGTGATTGATGTGGACATGGTGCCCAGCG
AAGGGCTGTGGAGAGGCCTGAGGGAAATGTTGGATCAGAGCAATCACTGGGATGGCACAGCCCTGGTGGT
GCCTGCATTTGAAATCCGCCGGTCCCGCCGAATGCCGATGAACAAGAACGAGCTGGTGCAGCTCTATCAG
GTGGGCGAAGTCCGGCCCTTCTATTATGGGCTGTGCACGCCTTGCCATGCGCCCACCAACTACTCCCGCT
GGGTCAACCTGCCAGAGGAGAGCTTGCTGAGACCTGCCTACGTGGTGCCCTGGAGGGACCCCTGGGAACC
ATTTTATGTGGCTGGAGGAAAGGTGCCCACATTTGACGAACGCTTTCGGCAGTATGGTTTCAATCGAATC
AGCCAGGCTTGTGAGCTGCACGTGGCAGGGTTTAATTTTGAGGTGCTGAACGAAGGTTTTCTGGTTCATA
AGGGATTCAAGGAGGCATTGAAGTTCCATCCCCAAAAGGAGGCTGAAAACCAGCGCAATAAGATCCTTTA
CCGCCAGTTCAAACAGGAGTTGAAGGCTAGGTACCCCAACTCTCCCCACCGATGCTGA

Translation (415 aa):
MQMSYAIRCAFYQLLLAALMLVAMLQLLYLSLLSGLHGQEEQEQYFEFFPPSPRSVDQVKSQLRTALASG
GVLDASGDYRVYRGLLKTTMDPNDVILATHASVDNLLHLSGLLERWEGPLSVSVFAATKEEAQLATVLAY
ALSSHCPEMRARVAMHLVCPSRYEAAVPDPREPGEFALLRSCQEVFDKLARVAQPGINYALGTNTSYPNN
LLRNLAREEANYALVIDVDMVPSEGLWRGLREMLDQSNHWDGTALVVPAFEIRRSRRMPMNKNELVQLYQ
VGEVRPFYYGLCTPCHAPTNYSRWVNLPEESLLRPAYVVPWRDPWEPFYVAGGKVPTFDERFRQYGFNRI
SQACELHVAGFNFEVLNEGFLVHKGFKEALKFHPQKEAENQRNKILYRQFKQELKARYPNSPHRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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