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Report for CCDS16947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16947.1 Public Mus musculus 2 Trp53inp2 23 108 98 CCDS HistoryNCBI Gene:68728Re-query CCDS DB by CCDS ID:16947.1Re-query CCDS DB by GeneID:68728See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043237.13 ENSMUSP00000037627.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043237.13Link to Ensembl Protein Viewer:ENSMUSP00000037627.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043237Re-query CCDS DB by Protein ID:ENSMUSP00000037627
Original member NCBI NM_178111.3 NP_835212.1 Updated not alive Link to Nucleotide Sequence:NM_178111.3Link to Protein Sequence:NP_835212.1Re-query CCDS DB by Nucleotide ID:NM_178111Re-query CCDS DB by Protein ID:NP_835212
Current member NCBI NM_178111.4 NP_835212.1 Accepted alive Link to Nucleotide Sequence:NM_178111.4Link to Protein Sequence:NP_835212.1Re-query CCDS DB by Nucleotide ID:NM_178111Re-query CCDS DB by Protein ID:NP_835212Link to BLAST:NP_835212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835212.1 221 Q8CFU8-1 221 100% 0 0

Chromosomal Locations for CCDS 16947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155385341 155385464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155385881 155386169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155386540 155386792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTTCCAGCGCTTCACCAGCCTTTTCTTCAACACCCCTGCGCCTCCTGAAGACTCCAACTGTCCGGGGG
CCTTTGTCTCTGAGGAGGATGAAGTGGATGGCTGGCTCATCATCGACCTACAGGACAGCTATACAGCTCC
TCCCGACCCCGGGGCCTCGCCTGCTCCTGCAGGCCGCCCTCCACCCGCGCCCTCCTTGATGGATGAGAGC
TGGTTTGTTACCCCTCCCGCCTGTTTTACTGCAGAGGGGCCCGGCCTTGGGCCTGCCCGCCTCCAGAGCA
ATCCGCTGGAGGACCTCCTCATTGAGCATCCCAGCATGTCCGTTTATGTCACCGGCAGCACCATAGTGCT
GGAGTCTGGGCCACCTTCCCCTCACCCTGAAGCTGCCTTGCCTGATCAGGACCTCAGCGATGGAGAGCTG
GCGCCTGCCCTCCGGGAACCCAGGGCCTTGCACCACGCAGCTGCTCCTATGCCCGCTCGAGCTGTGCTGC
TGGAGAAGGCTGGCCAGGTGCGGAGGCTGCAGAGAGCCCGACAGCGGGCTGAGCGCCACACATTGAGTGC
TAAAGTGTTGCAACGGCAGAATCGCGCCCGGGAGAGCCGTTCGCGCCGGCCCAAGCACCAGGGCAGCTTT
ATTTACCAGCCGTGCCAGCGCCAGTTCAACTACTGA

Translation (221 aa):
MFQRFTSLFFNTPAPPEDSNCPGAFVSEEDEVDGWLIIDLQDSYTAPPDPGASPAPAGRPPPAPSLMDES
WFVTPPACFTAEGPGLGPARLQSNPLEDLLIEHPSMSVYVTGSTIVLESGPPSPHPEAALPDQDLSDGEL
APALREPRALHHAAAPMPARAVLLEKAGQVRRLQRARQRAERHTLSAKVLQRQNRARESRSRRPKHQGSF
IYQPCQRQFNY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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