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Report for CCDS50051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50051.1 Public Mus musculus 17 Ccdc167 23 108 98 CCDS HistoryNCBI Gene:68597Re-query CCDS DB by CCDS ID:50051.1Re-query CCDS DB by GeneID:68597See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128751.2 ENSMUSP00000123612.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128751.2Link to Ensembl Protein Viewer:ENSMUSP00000123612.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128751Re-query CCDS DB by Protein ID:ENSMUSP00000123612
Original member Current member NCBI NM_026782.2 NP_081058.1 Accepted alive Link to Nucleotide Sequence:NM_026782.2Link to Protein Sequence:NP_081058.1Re-query CCDS DB by Nucleotide ID:NM_026782Re-query CCDS DB by Protein ID:NP_081058Link to BLAST:NP_081058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081058.1 97 Q9D162-1 97 100% 0 0

Chromosomal Locations for CCDS 50051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29704366 29704469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29705271 29705323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29705489 29705583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29716934 29716975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGACTAAAAAGAAGCGGGAGAATCTTGGTGTCGCTCAGGAGATTGACGGGCTAGAGGAAAAGCTGTCCC
GGTGTCGGAAGGACCTGGAGGCCGTGACCTCCCAGCTTTACAGGGCAGAGCTCAGTCCTGAGGACAGGAG
GTCTCTGGAGAAGGAGAAACACACCCTCATGAACAAAGCCTCCAAGTATGAGAAAGAGCTAAAGCTGCTT
CGACATGAGAACCGGAAGAACACGCTCCTCTCGGTGGCCATCTTCACTGTCTTCGCCCTGCTCTATGCTT
ACTGGACTATGTGA

Translation (97 aa):
MTKKKRENLGVAQEIDGLEEKLSRCRKDLEAVTSQLYRAELSPEDRRSLEKEKHTLMNKASKYEKELKLL
RHENRKNTLLSVAIFTVFALLYAYWTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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