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Report for CCDS18873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18873.1 Public Mus musculus 4 Hspb7 23 108 98 CCDS HistoryNCBI Gene:29818Re-query CCDS DB by CCDS ID:18873.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102486.4 ENSMUSP00000099544.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102486.4Link to Ensembl Protein Viewer:ENSMUSP00000099544.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102486Re-query CCDS DB by Protein ID:ENSMUSP00000099544
Original member Current member NCBI NM_013868.4 NP_038896.2 Accepted alive Link to Nucleotide Sequence:NM_013868.4Link to Protein Sequence:NP_038896.2Re-query CCDS DB by Nucleotide ID:NM_013868Re-query CCDS DB by Protein ID:NP_038896Link to BLAST:NP_038896.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038896.2 169 P35385 169 100% 0 0

Chromosomal Locations for CCDS 18873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141421785 141421980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141422501 141422634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141423879 141424058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAGCCATCGGACCTCCTCCGCCTTCAGAGCGGAGAGAAGCTTCCGTTCCTCTTCCTCCTCCTCCTCCT
CCTCTTCTTCTTCGGCCTCCCGTGCCCTTCCAGCCCAGGACCCACCCATGGAGAAGGCTTTGAGCATGTT
TTCAGACGACTTTGGCAGTTTTATGCTGCCCCACTCGGAGCCCCTGGCCTTCCCAGCCCGTCCCGGGGGC
CAAGGAAACATCAAGACCCTCGGGGATGCCTACGAGTTTACAGTGGACATGAGAGACTTCTCCCCTGAAG
ACATCATTGTCACCACCTTCAACAACCACATCGAGGTGCGGGCTGAGAAGCTGGCAGCTGATGGCACAGT
CATGAACACCTTTGCTCACAAGTGCCAACTACCAGAGGATGTGGACCCAACATCGGTGACCTCGGCCCTT
CGAGAGGATGGTAGCCTCACCATCCGGGCGCGGCGCCACCCCCACACAGAACATGTCCAGCAGACCTTCC
GGACTGAGATAAAAATCTGA

Translation (169 aa):
MSHRTSSAFRAERSFRSSSSSSSSSSSSASRALPAQDPPMEKALSMFSDDFGSFMLPHSEPLAFPARPGG
QGNIKTLGDAYEFTVDMRDFSPEDIIVTTFNNHIEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSAL
REDGSLTIRARRHPHTEHVQQTFRTEIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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