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Report for CCDS21932.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21932.2 Public Mus musculus 7 Edrf1 23 108 98 CCDS HistoryNCBI Gene:214764Re-query CCDS DB by CCDS ID:21932.2Re-query CCDS DB by GeneID:214764See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21932.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 1 aa longer. The uAUG appears to be only conserved in mouse and rat, while the dAUG shows much better conservation. This means that the second AUG, which has a stronger Kozak signal, may also be used due to leaky scanning past the first AUG.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21932.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051169.12 ENSMUSP00000059166.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051169.12Link to Ensembl Protein Viewer:ENSMUSP00000059166.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051169Re-query CCDS DB by Protein ID:ENSMUSP00000059166
Original member NCBI NM_178115.4 NP_835216.3 Updated not alive Link to Nucleotide Sequence:NM_178115.4Link to Protein Sequence:NP_835216.3Re-query CCDS DB by Nucleotide ID:NM_178115Re-query CCDS DB by Protein ID:NP_835216
Current member NCBI NM_178115.5 NP_835216.3 Accepted alive Link to Nucleotide Sequence:NM_178115.5Link to Protein Sequence:NP_835216.3Re-query CCDS DB by Nucleotide ID:NM_178115Re-query CCDS DB by Protein ID:NP_835216Link to BLAST:NP_835216.3

Chromosomal Locations for CCDS 21932.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 133637813 133637923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133638907 133639115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133640680 133640746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133641294 133641419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133643648 133643772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133643993 133644149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133646990 133647091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133647345 133647466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133648186 133648297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133650278 133650425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133650501 133650609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133651024 133651135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133651933 133652193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133653887 133653958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133654257 133654407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133656495 133656683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133656968 133657168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133658426 133658644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133660071 133660294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133661783 133661941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133662081 133662230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133663361 133663514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133665868 133665983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133667540 133667691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133671366 133671540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3723 nt):
ATGATGGGGGACCCCAAGGAAGCAGGAGCCGAGGCTTCTCCTTCAGGGGCGGCCGCCCGAGGAGGGCTCA
GCCTCCTGTCCCAGGCGGACTCCGAGGAGCCTTCTGCACAGGGATCGGCCTTATTTCTTGGAGGCAACGA
AGTGAAAAGCAGAGCTGTGGTAAAATACTCTTCTGCCCCTCCTCGAACAGCGTTTGCACGTCTCGAAGAA
AAAACAGACTTGAAACTCCCACCTGCCAACTGGTTACGAGAGAGTGCCAAACTAGGGCCAGCAGGAACCA
CCATTCTTGGCAATAGTAAGAAAAGCAAGCCGTTTTCAAGTTTCGGCATGGCGTATGACTTCATTGACTC
GGTGGGAAATGATGTGGATGTCGTCTCCGACTCAGAAAACATAAAAAAGCTCCTGAAGATTCCCTACAGC
AAGTCCCACGTGAGCATGGCTGTGCACCGCATAGGAAGGACCCTCTTACTAGATGAGCTGGACATTCAAG
AACTCTTTATGAGGTCATCTCAGACTGGTGATTGGACATGGTTGAAAGAGTTCTATCAAAGACTGATCGA
TCAGAAGTGGCAGAGGAAGAAGAAAAGCAAGGAGCACTGGTATCAGAAGGCTATTCTTTCCAAGTTCTTG
TACTACAGCATCAATGGTGATGGAGCTGCGCAGCCTGTCCCGTCTCCTGCAGAACAAGAAGAGTCATCGA
GTTCTCAGCAGACACATGAGTCTGAAGGGGCCGCCTGGCCTGCTCCCTTTGAAATGCCCTCTTCCGTGTC
TGAGGATCCCAGTGCTTCCAGTCAGGGCAGGGAGCCTCTTGAGCCCTCATGCATAGTGGGGCATGTGGCC
TCAGCACCTAAAGAGCAAAACCTTACTACTTTGTTCAATGACGGGGAGAACAGTCAGGGTCTTAAAAATG
ATTTCGTCCGGAATATCCTGTGGACTTTTGAAGATATTCATATGCTAGTTGGGTCTAACATGCCTATATT
TGGTGGAGGCAGATATCCAGCAGTTAGCTTACGTCTCAGGGATAACAACAAACCGATTAACGTGTTAACT
GGAATAGACTATTGGTTGGACAACCTGATATGCAATGTTCCAGAGCTCGTGATGTGCTTCCATGTTAACG
GGATCGTACAGAAATATGAAATGATAAAGACAGAAGAAATCCCCAATTTGGAAAACTCTAATTTTTCTAC
CAAAGTTATAAAAGACATTGCACAAAATATTTTATCATTTCTTAAATCTAATTGTACCAAAGAAGGGCAT
ACCTATTGGCTCTTTAAAGCAAGCGGCAGTGATATTGTGAAACTCTACGACCTCACGACTCTGTGTGAAG
AAACTGAAGACAAGTACCAGAACCCATTCACAATGCCAGTGGCTATCCTCTTATACAAGGTTGCTTGTAA
CATGATGATGAAGAAAAATCAAAACAAGAAACACTATGGAACTATTAGAACATTGCTTCTCAACTGTGTT
AAGTTGTTGGACAAAAGCAGACATCCTCAAATTATTGCTTCAGCCAACTACATGCTTTCAGAGCTTTTCC
AGCTGGATGAGCCTAAAAAGGAGGAAAGTTCAGACTCCCCTTTAAATGAGAATTCGGATGAAAGCTACAG
TGAAGAGGAGGAGGAGATGGCAGACAGTGATGAGAATGGATCCTACAGCACCAGCTCTGACCCAGCAGAT
GACAACAAGGCAGTGGCTATCATTAAGTCTGTTGGAGAACTGTCAGTACCGGAAAAATACAAGTCGATTC
ATCAGATCAGACCCAGTTGTGCATTTCCCGTTTGCCATGACACAGAAGAGCGCTGTCGACTCGTCCTTAG
CTATGTGTTGGAGGGTTTAAAATCTGTAGATAGTAGCATCAAAAAAGAAAGCGACCTTCCAGCAGCTGAC
CCCAGCACTCCTATCCCCTTAAAATATGAAGATGAATCCACAAGGGGTGGCCCTGAGGGGCTGGAGAAGC
AGATGGCCTTGTTCCTGGACAAAATGGGCTCCATTCAGAAGGGCAGTTGTTCTGGGCAGTCTGGAATGAC
CCCTGGTTCTTGGCAACATAAAATGAAACTTCAGCTGATTCTCAAGTCATCAAAGGCCTACTACATTTTG
TCAGATGCTGCCATGAGTCTTCAGAAGTATGGAAGAGCATTGAGATACATTAAGCTAGCTCTACAGAGCC
ATGATACTTACTGCTGCCTCTGCACCAACATGCTTTCTGAAGTGCTGCTGTTCCTCTCTCAATACCTGAC
ACTTTGCGGCGACATCCAACTCATGCTGGCCCAGAATGCAAATAACCGAGCAGCACACCTCGAGGAGTTT
AATTACCAAACAAAAGAAGACCAGGAGATCCTCCACAGTCTCCACAGAGAGTCCAGCTGCCAGGGATTTG
CATGGGCAACAGATCTATCTACAGACTTAGAAAGTCAACTCTCAGTTAGTTGTAAATGTTATGAGGCTGC
TAATGAAATCTTGCAATTCAGCGACTTAAAAAGTCAGAATCCAGAACACTATGTACAGGTGTTGAAGAGA
ATGGGAAACATTAGAAATGAAATCGGTGTATTCTACATGAATCAGGCTGCTGCACTGCAGGGTGAGCGAG
TAGTGAGCAAATCTGTGTCTGCTGCAGAGCAACAATTGTGGAAAAAAAGCTTTTCTTGTTTTGAAAAGGG
GATTCACAACTTTGAGTCGATTGATGATGCTACAAATGCTGCCCTTCTGCTGTGCAACACGGGAAGACTC
ATGCGGGTCTGTGCGCAGGCGCACTGCGGTGCAGAGGATGAGTTCAAACGGGAGTTCTCTCCAGAGGAGG
GCTTGTATTACAGCAAGGCCGTTGATTACTATTTGAAGGCTCTGAGGTCATTGGGAACGAGAGACATGCA
CCCAATTGTTTGGGATTCTGTGAACTGGGAATTGTCCACTACATACTTCACCATGGCGACTCTGCAGCAA
GATTATGCTCCATTATCCAGAAAAGCTCAGGAGCAGATTGAGAAAGAAGTGAGCGAGGCTATGATGAAGT
CCCTGAAGCACTGCGATGTTGACTCAGCAACTGCTCGGCAGCCCCTCTGTCAGTACCGAGCTGCGACCAT
CCATCACAGGCTGGCTTCCATGTACCACAGCTGTCTGAGGAACCAGGTTGGTGATGAGCATCTTAGGAAG
CAGCACCGAGTGCTGGCAGATCTCCACTACAGCAAAGCTGCGAAGCTCTTTCAGCTTCTCAAAGACGCTC
CCTGTGAACTGCTTAGAGTGCAGCTAGAAAGGGTGGCATTTGCAGAATTTCAGATGAGCAGTCAGAATAG
CAATGTTGGAAAGTTAAAAACATTATCTGGGGCACTTGATATCATGGTGAGAACGGAGCATGCGTTCCAG
CTCATCCGGAAGGAGCTTGTAGAGGAATGTGACCAGCCCAAGAATGATGAGGCTACACCGGCTGCTGATT
CTTCACCTAATCTTAATCGAGAAGAAGTGATCAAACTCCTTAGTATATTTGAATCTCGTCTGTCATTCCT
TCTCCTTCAATCCATCAAACTGATGTCGTCATCTAAAAGGAAAATGAGCAGTAACGCTGAAGAAGACATA
GTCCTCCAAACCAACAAGCAGATTTACTCCCAGCTTTTGAGAGCGACTGCCAACAGAAACTCAACTCTGC
TGGAAAGAATTGAAGTCGTCATCTGTTTGCTGGAGCAGCTTGCCTCCGGTAGCAGCCGATCGAGTGGCAG
TGCTGTCCCCTGA

Translation (1240 aa):
MMGDPKEAGAEASPSGAAARGGLSLLSQADSEEPSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEE
KTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYS
KSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFL
YYSINGDGAAQPVPSPAEQEESSSSQQTHESEGAAWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVA
SAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLT
GIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGH
TYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCV
KLLDKSRHPQIIASANYMLSELFQLDEPKKEESSDSPLNENSDESYSEEEEEMADSDENGSYSTSSDPAD
DNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAAD
PSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSIQKGSCSGQSGMTPGSWQHKMKLQLILKSSKAYYIL
SDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEF
NYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKR
MGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRL
MRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPIVWDSVNWELSTTYFTMATLQQ
DYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRK
QHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMSSQNSNVGKLKTLSGALDIMVRTEHAFQ
LIRKELVEECDQPKNDEATPAADSSPNLNREEVIKLLSIFESRLSFLLLQSIKLMSSSKRKMSSNAEEDI
VLQTNKQIYSQLLRATANRNSTLLERIEVVICLLEQLASGSSRSSGSAVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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