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Report for CCDS29881.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29881.2 Public Mus musculus 19 Wbp1l 23 108 98 CCDS HistoryNCBI Gene:226178Re-query CCDS DB by CCDS ID:29881.2Re-query CCDS DB by GeneID:226178See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 29881.2
The coding region has been updated to extend the N-terminus to an in-frame uAUG that is supported by available conservation data. The uAUG is well-conserved, has a strong Kozak signal, and the additional 9 aa improve the prediction of a signal peptide (SignalP 3.0).

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29881.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138302.8 ENSMUSP00000117929.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138302.8Link to Ensembl Protein Viewer:ENSMUSP00000117929.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000138302Re-query CCDS DB by Protein ID:ENSMUSP00000117929
Original member Current member NCBI NM_146099.3 NP_666211.3 Accepted alive Link to Nucleotide Sequence:NM_146099.3Link to Protein Sequence:NP_666211.3Re-query CCDS DB by Nucleotide ID:NM_146099Re-query CCDS DB by Protein ID:NP_666211Link to BLAST:NP_666211.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666211.3 369 Q8BGW2-3 369 100% 0 0

Chromosomal Locations for CCDS 29881.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46599204 46599293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46644353 46644455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46652474 46652635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46653965 46654719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGAGAGGAGAAGGCTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCCAGCCCCCTGTCAG
TGAGGGCTGAGCCCCCGCAGGATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACAC
AGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGG
ACCGTCGTCATCATTCTGAGCTGCTGCTGTGTCTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCTC
AGCAGCGGCAACATGAAATCAACCTGATCGCTTACCGGGAAGCCCACAACTACTCAGCGTTGCCGTTTTA
CTTCAGGTTTTTGCCAAACTCTTTGCTACCTCCTTATGAGGAAGTGGTGAACCGACCTCCAACTCCTCCC
CCACCGTACAGTGCCTTCCAGCTCCAACAGCAGCAGCAGCTGCTGCCACCTCCTCCTCAGGGTGGCCCTC
CAGGTGGCAGCCCCCCAGGCGCTGACCCGCCGCCCCAGGGCTCCCAGGGAGCGCAGAGCAGTCCTTTGTC
CGGACCGAGCCGAAGCAGCACAAGACCTCCAAGTGTCGCAGATCCTCAGTCCCCTGAAGTGCCCACTGAC
CGGGAAGCCACCAAAGCCTCTGGGACGGAGTCTGGTAGCCCCATGGCCGGCCACGGGGAGCTGGACCCGG
GCGCCTTCCTGGACCAGGATTCCGAGTGCAAGGAGGAGCTACTGAAAGATTCGCGTTCTGAGCGTGGCGG
CGTGTCCCCTGACAGTGAAGACAAGACCCCCGGCAGGCATCGCCGCTTCACAGGTGACTCAGGCATTGAG
GTGTGTGTGTGCAACCGGGGCCACCATGACGATGACCTCAAAGAGTTTAACACGCTCATAGATGATGCTC
TGGACGGGCCCCTGGACTTCTGTGACAGCTGTCATGTACGGCCTCCTGTTGATGAAGAGGAAGGTCTCTG
CCTGTCCTCGGAGGGTCAGGCTCGGGAGCATGGGCACCCCCACCTGCCACGGCCGCCTGCGTGTCTGCTG
CTAAACACCATCAATGAGCAGGACTCTCCAAATTCCCAGCACAGTGGCTCCCCGAGCTAG

Translation (369 aa):
MERRRLLGGMALLLLQALPSPLSVRAEPPQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVW
TVVIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNSLLPPYEEVVNRPPTPP
PPYSAFQLQQQQQLLPPPPQGGPPGGSPPGADPPPQGSQGAQSSPLSGPSRSSTRPPSVADPQSPEVPTD
REATKASGTESGSPMAGHGELDPGAFLDQDSECKEELLKDSRSERGGVSPDSEDKTPGRHRRFTGDSGIE
VCVCNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEGQAREHGHPHLPRPPACLL
LNTINEQDSPNSQHSGSPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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