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Report for CCDS50875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50875.1 Public Mus musculus 3 Ect2 23 108 98 CCDS HistoryNCBI Gene:13605Re-query CCDS DB by CCDS ID:50875.1Re-query CCDS DB by GeneID:13605See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108298.8 ENSMUSP00000103933.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108298.8Link to Ensembl Protein Viewer:ENSMUSP00000103933.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108298Re-query CCDS DB by Protein ID:ENSMUSP00000103933
Original member Current member EBI ENSMUST00000176242.8 ENSMUSP00000135740.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176242.8Link to Ensembl Protein Viewer:ENSMUSP00000135740.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000176242Re-query CCDS DB by Protein ID:ENSMUSP00000135740
Original member NCBI NM_001177625.1 NP_001171096.1 Updated not alive Link to Nucleotide Sequence:NM_001177625.1Link to Protein Sequence:NP_001171096.1Re-query CCDS DB by Nucleotide ID:NM_001177625Re-query CCDS DB by Protein ID:NP_001171096
Current member NCBI NM_001177625.2 NP_001171096.1 Accepted alive Link to Nucleotide Sequence:NM_001177625.2Link to Protein Sequence:NP_001171096.1Re-query CCDS DB by Nucleotide ID:NM_001177625Re-query CCDS DB by Protein ID:NP_001171096Link to BLAST:NP_001171096.1
Original member NCBI NM_001177626.1 NP_001171097.1 Updated not alive Link to Nucleotide Sequence:NM_001177626.1Link to Protein Sequence:NP_001171097.1Re-query CCDS DB by Nucleotide ID:NM_001177626Re-query CCDS DB by Protein ID:NP_001171097
Current member NCBI NM_001177626.2 NP_001171097.1 Accepted alive Link to Nucleotide Sequence:NM_001177626.2Link to Protein Sequence:NP_001171097.1Re-query CCDS DB by Nucleotide ID:NM_001177626Re-query CCDS DB by Protein ID:NP_001171097Link to BLAST:NP_001171097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171096.1 882 Q07139-2 882 100% 0 0
NP_001171097.1 882 Q07139-2 882 100% 0 0

Chromosomal Locations for CCDS 50875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27098399 27098488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27100828 27100971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27102395 27102502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27115396 27115550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27117778 27117916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27121961 27122080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27122397 27122475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27123903 27123984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27126879 27126975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27127734 27127844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27130054 27130122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27131785 27131904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27137025 27137161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27138502 27138724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27138848 27138910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27139014 27139129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27139532 27139662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27141626 27141699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27144952 27145059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27145956 27146045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27146837 27147019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27148993 27149072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27150029 27150158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2649 nt):
ATGGCTGACGACAGCGTGTTACCATCTCCTTCTGAGATAACTAGCTTGGCAGACTCTTCAGTGTTTGATT
CTAAAGTTGCTGAAATGTCCAAGGAAAACTTGTGCTTGGCGTCTACTTCAAATGTTGATGAAGAAATGCC
GCAGGTTGAAGCAAGAGTGATAATGGTCCAGGATGCTGGGAAACAAGAAGAACTTCTAAAGGCCTTAAAG
GAAATGAAAGTGCCCTGTGTAAAGATGGACTCAATGGAAGAATTTGAAAGTTTGGATTCCCCAGAATTTG
AGAATATATTTGTAGTTACTGACTTCCAGAATTCTGTCTTCAATGACTTATACAAGGCTGATTGTAGGAT
TGTTGGGCCACCAGTTATACTCAACTGTGCACAAAGGGGAGAGCCCTTGCCGTTTTCCTGCCGGCCGCTG
TATTGTACGAGTATGCTGAACCTGGTGCTCTGCTTCACTGGATTCAGGAAGAAGGAGGAGCTTGTCAAAT
TGGTGACGTTGGTTCATCATATGGGTGGAGTTATTCGAAAAGAGTGTAATTCCAAAGTAACACATCTGGT
GGCAAATTGTACACAAGGCGAAAAATTTAGGGTTGCTGTGAGCCTGGGCACTCCAATTATGAAGCCAGAA
TGGATTTATAAAGCGTGGGAAAGACGCAATGAACAGTGTTTCTGTGCAGCAGTTGATGACTTTAGAAATG
AATTTAAAGTTCCTCCATTCCAAGATTGCATTTTAAGTTTCCTGGGATTTTCAGATGAAGAGAAACATAG
TATGGAAGAAATGACTGAAATGCAAGGAGGTAGCTATTTACCAGTTGGGGATGAAAGGTGCACTCACCTT
ATTGTTGAAGAGAATACAGTAAAGGACCTTCCATTCGAACCTTCAAAGAAACTTTTTGTTGTCAAGCAAG
AGTGGTTCTGGGGAAGCATTCAGATGGACGCTCGTGCAGGAGAGACTATGTATTTGTATGAAAAGGCTAA
TACTCCTGAGCTCAAGAAATCGGTGTCTCTGCTTTCTCTAAGTACTCCAAACAGCAACCGCAAGAGACGG
AGATTGAAAGAGACCCTGGCTCAGCTCTCCAGGGAGACTGACCTCTCTCCTTTCCCTCCCCGGAAGCGGC
CCTCAGCTGAGCACTCTCTTTCTATTGGCTCACTCCTGGATATCTCCAACACACCCGAGTCCAGCATCCA
CTATGGAGAAACACCGAAGTCCTGTGCTAAGTCTTCTAGAAGTTCTACTCCAGTTCCTCCAAAGCAGTCA
GCCAGGTGGCAGGTGGCGAAAGAGCTCTACCAGACTGAGAGCAATTATGTCAATATACTGGCCACAATCA
TTCAATTATTTCAGGTGCCCTTAGAAGAAGAAGGACAGCGTGGTGGGCCTATTCTTGCACCTGAGGAGAT
CAAGACTATTTTTGGGAGCATCCCAGATATCTTTGATGTGCATATGAAGATCAAGGATGATCTTGAAGAC
CTTATTGCTAACTGGGATGAGAGCAGAAGTATTGGTGACATCTTTCTTAAATATGCAAAAGATTTGGTAA
AAACCTACCCTCCGTTTGTAAACTTCTTTGAAATGAGCAAGGAAATGATCATTAAATGTGAGAAACAAAA
GCCCAGATTTCATGCTTTCCTCAAGATAAATCAAGCTAAACCAGAATGTGGACGACAGAGCCTTGTGGAA
CTTCTCATCCGGCCAGTGCAGAGGCTACCCAGTGTCGCTTTACTTTTAAACGATCTTAAAAAGCATACAG
CTGATGAAAATCCAGACAAAAGCACTTTAGAAAAAGCTATTGGATCACTAAAAGAAGTAATGACACATAT
CAATGAGGATAAGAGAAAAACAGAAGCACAGAAGCAAATTTTTGATGTTGTTTATGAAGTAGATGGATGC
CCAGCTAATCTCTTATCTTCTCATCGGAGCCTGGTGCAACGAGTGGAAACGGTTTCCCTTGGTGAGCACC
CTTGCGACCGAGGAGAACAAGTCACTCTCTTCCTCTTCAATGACTGCCTCGAGATAGCAAGAAAGCGGCA
CAAGGTTATTGGCACTTTTAGAAGTCCTCACGACCGCACCCGGCCCCCCGCTTCTCTGAAGCACATTCAT
CTCATGCCTCTTTCTCAGATTAAGAAGGTGCTGGACATCCGAGAGACAGAAGATTGTCACAATGCCTTTG
CCTTGCTTGTAAGGCCACCAACAGAACAGGCCAATGTACTGCTCAGCTTCCAGATGACGTCAGAGGAGCT
TCCAAAGGAGAGCTGGCTGAAGATGCTGTGCCGACATGTAGCCAACACCATTTGTAAGGCAGATGCTGAG
AATCTTATGTATGTGGCTGATCCAGAATCCTTTGAAGTAAATACAAAAGATATGGATAGTACATTGAGTC
GAGCATCTAGAGCAATAAAGAAGACTTCAAAAAAGGTTACAAGGGCATTCTCTTTTTCCAAAACTCCCAA
GAGAGCCCTGCGGATGGCTCTTTCATCATCCCATAGCTCAGAGGGAAGGAGTCCTCCGAGCAGTGGCAAG
CTTGCTGTGAGCCGTCTGTCCAGCACATCATCCTTAGCAGGTATTCCATCTCCCTCCCTTGTCAGCCTCC
CTTCTTTCTTTGAACGGAGAAGTCATACATTAAGTCGATCTACAACTCACTTGATATGA

Translation (882 aa):
MADDSVLPSPSEITSLADSSVFDSKVAEMSKENLCLASTSNVDEEMPQVEARVIMVQDAGKQEELLKALK
EMKVPCVKMDSMEEFESLDSPEFENIFVVTDFQNSVFNDLYKADCRIVGPPVILNCAQRGEPLPFSCRPL
YCTSMLNLVLCFTGFRKKEELVKLVTLVHHMGGVIRKECNSKVTHLVANCTQGEKFRVAVSLGTPIMKPE
WIYKAWERRNEQCFCAAVDDFRNEFKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHL
IVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKANTPELKKSVSLLSLSTPNSNRKRR
RLKETLAQLSRETDLSPFPPRKRPSAEHSLSIGSLLDISNTPESSIHYGETPKSCAKSSRSSTPVPPKQS
ARWQVAKELYQTESNYVNILATIIQLFQVPLEEEGQRGGPILAPEEIKTIFGSIPDIFDVHMKIKDDLED
LIANWDESRSIGDIFLKYAKDLVKTYPPFVNFFEMSKEMIIKCEKQKPRFHAFLKINQAKPECGRQSLVE
LLIRPVQRLPSVALLLNDLKKHTADENPDKSTLEKAIGSLKEVMTHINEDKRKTEAQKQIFDVVYEVDGC
PANLLSSHRSLVQRVETVSLGEHPCDRGEQVTLFLFNDCLEIARKRHKVIGTFRSPHDRTRPPASLKHIH
LMPLSQIKKVLDIRETEDCHNAFALLVRPPTEQANVLLSFQMTSEELPKESWLKMLCRHVANTICKADAE
NLMYVADPESFEVNTKDMDSTLSRASRAIKKTSKKVTRAFSFSKTPKRALRMALSSSHSSEGRSPPSSGK
LAVSRLSSTSSLAGIPSPSLVSLPSFFERRSHTLSRSTTHLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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