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Report for CCDS39502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39502.1 Public Mus musculus 6 Gng12 23 108 98 CCDS HistoryNCBI Gene:14701Re-query CCDS DB by CCDS ID:39502.1Re-query CCDS DB by GeneID:14701See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043148.12 ENSMUSP00000046557.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043148.12Link to Ensembl Protein Viewer:ENSMUSP00000046557.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043148Re-query CCDS DB by Protein ID:ENSMUSP00000046557
Original member Current member EBI ENSMUST00000114222.3 ENSMUSP00000109860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114222.3Link to Ensembl Protein Viewer:ENSMUSP00000109860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114222Re-query CCDS DB by Protein ID:ENSMUSP00000109860
Original member Current member EBI ENSMUST00000114224.7 ENSMUSP00000109862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114224.7Link to Ensembl Protein Viewer:ENSMUSP00000109862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114224Re-query CCDS DB by Protein ID:ENSMUSP00000109862
Original member Current member EBI ENSMUST00000114225.7 ENSMUSP00000109863.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114225.7Link to Ensembl Protein Viewer:ENSMUSP00000109863.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114225Re-query CCDS DB by Protein ID:ENSMUSP00000109863
Original member Current member EBI ENSMUST00000114226.7 ENSMUSP00000109864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114226.7Link to Ensembl Protein Viewer:ENSMUSP00000109864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114226Re-query CCDS DB by Protein ID:ENSMUSP00000109864
Original member Current member EBI ENSMUST00000114227.7 ENSMUSP00000109865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114227.7Link to Ensembl Protein Viewer:ENSMUSP00000109865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114227Re-query CCDS DB by Protein ID:ENSMUSP00000109865
Original member Current member EBI ENSMUST00000114228.7 ENSMUSP00000109866.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114228.7Link to Ensembl Protein Viewer:ENSMUSP00000109866.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114228Re-query CCDS DB by Protein ID:ENSMUSP00000109866
Original member Current member NCBI NM_001177556.1 NP_001171027.1 Accepted alive Link to Nucleotide Sequence:NM_001177556.1Link to Protein Sequence:NP_001171027.1Re-query CCDS DB by Nucleotide ID:NM_001177556Re-query CCDS DB by Protein ID:NP_001171027Link to BLAST:NP_001171027.1
Original member Current member NCBI NM_001177557.1 NP_001171028.1 Accepted alive Link to Nucleotide Sequence:NM_001177557.1Link to Protein Sequence:NP_001171028.1Re-query CCDS DB by Nucleotide ID:NM_001177557Re-query CCDS DB by Protein ID:NP_001171028Link to BLAST:NP_001171028.1
Original member Current member NCBI NM_001177558.1 NP_001171029.1 Accepted alive Link to Nucleotide Sequence:NM_001177558.1Link to Protein Sequence:NP_001171029.1Re-query CCDS DB by Nucleotide ID:NM_001177558Re-query CCDS DB by Protein ID:NP_001171029Link to BLAST:NP_001171029.1
Original member Current member NCBI NM_001177559.1 NP_001171030.1 Accepted alive Link to Nucleotide Sequence:NM_001177559.1Link to Protein Sequence:NP_001171030.1Re-query CCDS DB by Nucleotide ID:NM_001177559Re-query CCDS DB by Protein ID:NP_001171030Link to BLAST:NP_001171030.1
Original member Current member NCBI NM_001177560.1 NP_001171031.1 Accepted alive Link to Nucleotide Sequence:NM_001177560.1Link to Protein Sequence:NP_001171031.1Re-query CCDS DB by Nucleotide ID:NM_001177560Re-query CCDS DB by Protein ID:NP_001171031Link to BLAST:NP_001171031.1
Original member Current member NCBI NM_025278.5 NP_079554.1 Accepted alive Link to Nucleotide Sequence:NM_025278.5Link to Protein Sequence:NP_079554.1Re-query CCDS DB by Nucleotide ID:NM_025278Re-query CCDS DB by Protein ID:NP_079554Link to BLAST:NP_079554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171027.1 72 Q9DAS9 72 100% 0 0
NP_001171028.1 72 Q9DAS9 72 100% 0 0
NP_001171029.1 72 Q9DAS9 72 100% 0 0
NP_001171030.1 72 Q9DAS9 72 100% 0 0
NP_001171031.1 72 Q9DAS9 72 100% 0 0
NP_079554.1 72 Q9DAS9 72 100% 0 0

Chromosomal Locations for CCDS 39502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 67015751 67015843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67017464 67017589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (219 nt):
ATGTCCAGCAAGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGCAGCTGAGATTGG
AAGCCTCCATCGAAAGAATAAAGGTCTCAAAAGCATCAGCAGACCTGATGTCATACTGTGAGGAGCATGC
CCGGAGCGACCCCCTGCTGATGGGCATACCGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTGCATC
ATCTTATAG

Translation (72 aa):
MSSKTASTNSIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLMGIPTSENPFKDKKTCI
IL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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