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Report for CCDS17799.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17799.2 Public Mus musculus 3 Rwdd3 23 108 98 CCDS HistoryNCBI Gene:66568Re-query CCDS DB by CCDS ID:17799.2Re-query CCDS DB by GeneID:66568See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17799.2
The coding region has been updated to represent an alternate splice pattern that is better supported. The update changes the protein length from 106 aa to 339 aa, affects splicing in the 3' CDS and adds a PFAM RWD domain.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17799.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106467.7 ENSMUSP00000102075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106467.7Link to Ensembl Protein Viewer:ENSMUSP00000102075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106467Re-query CCDS DB by Protein ID:ENSMUSP00000102075
Original member Current member NCBI NM_025637.3 NP_079913.2 Accepted alive Link to Nucleotide Sequence:NM_025637.3Link to Protein Sequence:NP_079913.2Re-query CCDS DB by Nucleotide ID:NM_025637Re-query CCDS DB by Protein ID:NP_079913Link to BLAST:NP_079913.2

Chromosomal Locations for CCDS 17799.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121156188 121156302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121156401 121156516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121158768 121159255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121171112 121171182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121171275 121171419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121171592 121171676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGA
TGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTCCTCGTGAAACCCAGCTCCTCCAAATAGTCGGCATCCA
CCATAAGCATTTGTGTATCACGTCCCTGACAACAGGACGCTGTAGTTGGTTGTCAGCCACGTGGAAGGCA
GTCAGGAAATGCTTGTTAAGGCTGCTGAAAAATGGCAGCCGATTCCAGACTTCTGCTGGACGCAGCATGG
AGACCTTCTCTTCTAACCCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGT
GGGTGAGGATGTGCCCTTAGAGTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATC
TCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCA
GGAAGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCT
CAGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGA
CCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGT
GGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGG
AGACAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGA
AAGAAATGCAAAGAGAAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTC
TGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGG
GGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGA

Translation (339 aa):
MVEEVRQELSALAAIFCGPNEWEMLSCSDGAQCPPRETQLLQIVGIHHKHLCITSLTTGRCSWLSATWKA
VRKCLLRLLKNGSRFQTSAGRSMETFSSNPETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLCLPGI
SVTSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPETASSHEKCTLPESATGDDG
PWMTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKEYLILQKTSKVDVDSSG
KKCKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKEFGAAGLGELFSECVLGLVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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